PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004496070.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family FAR1
Protein Properties Length: 766aa    MW: 88915.1 Da    PI: 7.207
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004496070.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR141.25.5e-1349130189
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                     k+Y +YAk++GF + k +sk+  ++g  +  t+ Cs+  k  +++kk     r++ +++t+C+a+l+   + dg+  v++++leHnHel
  XP_004496070.1  49 KYYTNYAKRMGFGIGKISSKNG-DDG-RKYFTLACSCARKYVSTSKK-----RPHLTSKTECRARLNACISLDGTITVSRVVLEHNHEL 130
                     69************99988877.444.68889999999988887766.....99***************999****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.9E-1049130IPR004330FAR1 DNA binding domain
PfamPF105515.5E-38252346IPR018289MULE transposase domain
PROSITE profilePS5096610.324537573IPR007527Zinc finger, SWIM-type
PfamPF044341.5E-6538569IPR007527Zinc finger, SWIM-type
SMARTSM005751.5E-5548575IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 766 aa     Download sequence    Send to blast
MEEIVAPSDK EEINEGNKKR DDILDAIVAC EDEEPRTGMT FSSEEEVTKY YTNYAKRMGF  60
GIGKISSKNG DDGRKYFTLA CSCARKYVST SKKRPHLTSK TECRARLNAC ISLDGTITVS  120
RVVLEHNHEL GQTKGRYFRC DDSSGPLIKK SLEVNDQVVV NGSRSLQSVT VESNGCENLI  180
FGEKDCRNYV HKVRRLKLGR GDVEAIQNFF VRMQKQNSQF YYAMDLDDRR HLRNVFWADA  240
RSRAAYECFG EVITFDTTYL TNKYDMPLTP LVGVNHHGQS ILLGCAILSN EDTETFTWLF  300
TRWLECMFGH APNAIITDED KEMKNAIEVV FPKARHRWCL WHIMKKVPEK LARHSYFESI  360
KTLLHDVVYD SLSKSDFMER WGNMIEHYKL NDNEWLKGLF DERHRWVPVY VKDTFWAGMS  420
TTQRSESINS YFDGYVNSKT TLKQFVEQYD DVLNDKIEKE SMADYDSFNT IIACVSYFGF  480
EFQFQKAFTN AKFKEFQVEV ASMMYCNTCF ERVEELNSIF SVTENKKVYE KIKDMVFKVS  540
FNEKEFTLQC TCCLFEFKGI LCRHILCVLK LIGKTDSVPP YYILSRWRKY VKRRYTLIKC  600
GFEELQRVNK ACDAFYEVAS TRINSEDDLL KVMNWIKDLK NVLTCKEPSS KITGEHSSIP  660
NHVTRILGPT VAQNNGLPPS KRKTSKVDQI LKKKLAIKRS QENNQENTID QSQEEALCRP  720
RVQEIENEEH LGDVSQDPYY PQVINHNISC CELLQAQHLM NDQPSS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004496070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004496070.10.0protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A1S2XXG90.0A0A1S2XXG9_CICAR; protein FAR-RED IMPAIRED RESPONSE 1-like
STRINGXP_004496070.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.11e-125FAR1 family protein