PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004496131.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family NAC
Protein Properties Length: 462aa    MW: 51837.2 Da    PI: 7.2036
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004496131.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.41.2e-52311581128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     l+pGfrFhPtdeelv +yLk+kv gk++++ ++i+evdiyk+ePwdL   +++k++++ewyfFs  dkky +g r nrat++gyWkatg+d++v+
  XP_004496131.1  31 LAPGFRFHPTDEELVIYYLKRKVCGKHFRF-DAISEVDIYKSEPWDLAdkSRLKTRDQEWYFFSALDKKYGNGGRMNRATSQGYWKATGNDRPVK 124
                     579*************************99.99**************75348899999************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     + + ++vglkktLvf++grap+g++t+Wvmheyrl
  XP_004496131.1 125 H-DLRTVGLKKTLVFHSGRAPDGKRTNWVMHEYRL 158
                     *.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.29E-6022186IPR003441NAC domain
PROSITE profilePS5100557.9131185IPR003441NAC domain
PfamPF023654.2E-2733158IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MGHETLLLPA PPTTVNPPLS ASSTAAPPTS LAPGFRFHPT DEELVIYYLK RKVCGKHFRF  60
DAISEVDIYK SEPWDLADKS RLKTRDQEWY FFSALDKKYG NGGRMNRATS QGYWKATGND  120
RPVKHDLRTV GLKKTLVFHS GRAPDGKRTN WVMHEYRLVD EEMERAGSGP SQPQDAYVLC  180
RVFHKNNIGP PNGQRYAPFV EEEWDDGLAM VPGAASMNNG SVDRILRLEG NGGVSCSEGR  240
NNVAQDSQSN NNKAPLDVNK LPIETQNLLA VCKRESQAEY PSPEKDDSKH MHVDEYPSPQ  300
TDNPKPLPQI YKRRRHNMNS NHSNVSGDSF PNSQDPCSST ITTAATTLPT TAVTTTTTNT  360
APKKHFLSAL VEFSLLESLE SKENHTSVPP VDFDMDSLET SVPPSCAKYI KHLQSEKQKL  420
GVEKETMRFE LMSAQAMINI LQSRVEIISR ENEEMKRMMR NP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-483018719170NAC domain-containing protein 19
3swm_B1e-483018719170NAC domain-containing protein 19
3swm_C1e-483018719170NAC domain-containing protein 19
3swm_D1e-483018719170NAC domain-containing protein 19
3swp_A1e-483018719170NAC domain-containing protein 19
3swp_B1e-483018719170NAC domain-containing protein 19
3swp_C1e-483018719170NAC domain-containing protein 19
3swp_D1e-483018719170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC051/NAC052 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). {ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00612ChIP-seqTransfer from AT3G10490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004496131.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004496131.10.0NAC domain containing protein 50
SwissprotQ9SQX91e-127NAC50_ARATH; NAC domain containing protein 50
TrEMBLA0A1S2XYZ60.0A0A1S2XYZ6_CICAR; NAC domain containing protein 50
STRINGXP_004496131.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81893241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.11e-101NAC domain containing protein 50
Publications ? help Back to Top
  1. Zhang S, et al.
    C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association.
    Cell Discov, 2019.
    [PMID:26617990]