PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004496134.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family NAC
Protein Properties Length: 577aa    MW: 63601.9 Da    PI: 4.2631
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004496134.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1609.1e-5071333128
             NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     pGfrFhPtdeelv++yLk+k++++  +++++++ +diyk+ePwdLp  +k+k+++ ewyfF+  dkky +g r+nrat++gyWk+tgkd+ v++ 
  XP_004496134.1   7 PGFRFHPTDEELVCFYLKRKLARNLPSCFDHLAVIDIYKFEPWDLPslSKLKTKDLEWYFFTVLDKKYGHGIRTNRATDRGYWKTTGKDRIVKN- 100
                     9*********************************************5448888888**********************************9999. PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++ +vg+kktLv+++grap+g +t+Wvmheyr+
  XP_004496134.1 101 GEDTVGMKKTLVYHSGRAPHGDRTNWVMHEYRM 133
                     999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100554.0215155IPR003441NAC domain
SuperFamilySSF1019411.44E-555155IPR003441NAC domain
PfamPF023655.2E-277133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0009962Biological Processregulation of flavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MAVYNSPGFR FHPTDEELVC FYLKRKLARN LPSCFDHLAV IDIYKFEPWD LPSLSKLKTK  60
DLEWYFFTVL DKKYGHGIRT NRATDRGYWK TTGKDRIVKN GEDTVGMKKT LVYHSGRAPH  120
GDRTNWVMHE YRMIDEELAK AGLQDTYVAC RIFEKSGSGP KNGEKYGAPF VEAEWEGVDN  180
RVDPLPAVDN EPLKQIVPSV PAIDNELLKQ IVPVPAASGD DYVEADDLKQ ELETSVTVGS  240
ADPPSNFYYG ECSSHPQLSQ TFVNDHMQLE ASFGMYDPVL DQPDNMAGQY GQDTNLVQDG  300
DYGELNLGEN PLNFNFASDD PDLYFDATGY LTSLGEEYME TNDVENLDEI SPPEIDPSVA  360
AMLDEYLNYP AGDISKHISF DSPLSIGCES PIANPVQPFI EQNVEDEANG SSLANKQVSE  420
AQSSNEAIPT EDPEVSSWVS GDTNPFVKQA NKLLASLPAA PAFASEFPTK EFALRIHPAA  480
QSSSSAHITA GMISITDITF RGNAMDWMVG KNGGFNTIMS TGFSQTDGNS ATLEPISDLV  540
CSKAAFVLSH SWVFLTGFSV VVLSLSFKIG SLMYTGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-40716119171NO APICAL MERISTEM PROTEIN
1ut4_B1e-40716119171NO APICAL MERISTEM PROTEIN
1ut7_A1e-40716119171NO APICAL MERISTEM PROTEIN
1ut7_B1e-40716119171NO APICAL MERISTEM PROTEIN
3swm_A1e-40716122174NAC domain-containing protein 19
3swm_B1e-40716122174NAC domain-containing protein 19
3swm_C1e-40716122174NAC domain-containing protein 19
3swm_D1e-40716122174NAC domain-containing protein 19
3swp_A1e-40716122174NAC domain-containing protein 19
3swp_B1e-40716122174NAC domain-containing protein 19
3swp_C1e-40716122174NAC domain-containing protein 19
3swp_D1e-40716122174NAC domain-containing protein 19
4dul_A1e-40716119171NAC domain-containing protein 19
4dul_B1e-40716119171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00059PBMTransfer from AT5G04410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004496134.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004496134.10.0NAC domain-containing protein 53 isoform X2
TrEMBLA0A1S2XXL80.0A0A1S2XXL8_CICAR; NAC domain-containing protein 53 isoform X2
STRINGXP_004496133.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.11e-103NAC domain containing protein 2