PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004496311.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 252aa    MW: 28543.1 Da    PI: 8.6549
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004496311.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.13.5e-068099120
                    EEETTTTEEESSHHHHHHHH CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHi 20
                    ++Cp C+ksF+r  n++ H+
  XP_004496311.1 80 FSCPVCNKSFNRFNNMQMHM 99
                    89*****************9 PP
2zf-C2H2130.00031168190123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C +C k F  + + ++H +++
  XP_004496311.1 168 FECRKCRKAFAVRGDWRTHEKNC 190
                     89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.84E-655101No hitNo description
PROSITE profilePS5015710.22180107IPR007087Zinc finger, C2H2
SMARTSM003550.05480102IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.8E-78099IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
PROSITE profilePS508688.004126142IPR003616Post-SET domain
SMARTSM00355140131163IPR015880Zinc finger, C2H2-like
SuperFamilySSF576679.34E-5153188No hitNo description
Gene3DG3DSA:3.30.160.600.001155188IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035573168188IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MSMQSHHHLN SFSSCCGSSE SGCSSLVEDE DSIFLSLAPP GHQIPKLSSP LQQNTPTTIP  60
HTPQYWIPSP SQILVGPTHF SCPVCNKSFN RFNNMQMHMW GHGSQYRKGA ESLRGSNSKA  120
AASSMVKLPC YCCAEGCKNN INYPRSKPLK DFRTLQTHYK RKHGGKSFEC RKCRKAFAVR  180
GDWRTHEKNC GKLWFCICGS DFKHKRSLKD HVRAFGNGHA PHTLESFTFD ALLRDQNGNI  240
QDYEEQQQEE ET
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004496311.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004496311.10.0zinc finger protein WIP6-like
SwissprotQ9FX681e-103ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A1S2XZC70.0A0A1S2XZC7_CICAR; zinc finger protein WIP6-like
STRINGXP_004496311.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-105C2H2-like zinc finger protein