PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004496448.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ERF
Protein Properties Length: 348aa    MW: 38129.6 Da    PI: 6.9278
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004496448.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.2e-20126175255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f tae Aa+a+++a++k++g
  XP_004496448.1 126 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFETAEAAARAYDEAALKFRG 175
                     7********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.24E-22126184IPR016177DNA-binding domain
PROSITE profilePS5103225.725126183IPR001471AP2/ERF domain
PfamPF008479.0E-14126175IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-33126184IPR001471AP2/ERF domain
SMARTSM003804.5E-38126189IPR001471AP2/ERF domain
PRINTSPR003671.1E-11127138IPR001471AP2/ERF domain
CDDcd000181.44E-15134185No hitNo description
PRINTSPR003671.1E-11149165IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MSYPLVSAPT HDGLGQAQNE WVQVQQGYVP VSTSSNYSPR LYSSTSITSS SSPSSSSSSW  60
VVGHKRGRED DFHNTRQVAA SSHHQDFTSI HTNVADFRLP SSQGPSSSEA RRRESNEEES  120
GERRRRYRGV RQRPWGKWAA EIRDPHKAAR VWLGTFETAE AAARAYDEAA LKFRGSRAKL  180
NFPENVTTTI SPTFPPNTSS TVSVNPATHY SPAPPLQMQQ PPFTQFQGSS DLLRDYYQYS  240
QILKGSADFQ GLEQWFYESQ MAAIHSSSSM LSPSPPLLSF SSSSSSLPTT AFSPATQLSS  300
ASLPLFPGQQ IEFFRPPEDH SHGEDVGGGS GLPPSTWSDT SGYPPPSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-23125186163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110125RRRESNEEESGERRRR
2121126ERRRRY
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004496448.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004496448.10.0ethylene-responsive transcription factor ERF110-like isoform X2
TrEMBLA0A1S2XYF70.0A0A1S2XYF7_CICAR; ethylene-responsive transcription factor ERF110-like isoform X2
STRINGXP_004496448.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.11e-19related to AP2 6