PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004496533.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family GRAS
Protein Properties Length: 662aa    MW: 73104.9 Da    PI: 6.4415
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004496533.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS310.73.4e-952936622374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++ L+e+A a+s+g++e a+++Larl ++ +p  ++ +Rl+ +++ AL++r+++    + +  ++ e     s+e++ +++l+++ s ++k+s++
  XP_004496533.1 293 KQSLMEAASAISEGKMETASEILARLVQNPNPISNSDRRLTDCMVSALKSRINH----VENPPQVVEL---FSKEHAESTQLLFDHSLCFKVSFM 380
                     578**************************************************9....4444444444...399999****************** PP

            GRAS  97 taNqaIleavege.........ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181
                     +aN  Ilea+ +e         +++ ++Dfd+++G Q+++Ll++L  R +g+p +l+iT+v++  +g+ e+l+++ge L + Ae+l++ fef+v 
  XP_004496533.1 381 AANLGILEAAFEEkkesvnndmKKICVVDFDMGNGKQYASLLHELYVRLNGTPaTLKITAVAE--TGDDERLKTVGEFLGRQAERLRIGFEFKV- 472
                     ********87555477788888899************************887779********..77**************************9. PP

            GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276
                     v+ +l++l+ ++L ++++  laVn++++l+r++desvs+e++rde+L+ vk l P vv+v eqe+++n+++F++r++e+++yy alfds+e++++
  XP_004496533.1 473 VSLKLAELTRDSLGCDSDAFLAVNFAFKLFRMPDESVSTENPRDELLRRVKALAPGVVTVLEQEINTNTAPFVARVAESCSYYGALFDSIESTMA 567
                     799******************************************************************************************** PP

            GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                     r++ er+k+E+  l+r++ n+vaceg++r+er+e ++kWr+r+++aGFk  p+s+k+a+++k+ l+  + +  +v+ee+g + +gW++r+L+++S
  XP_004496533.1 568 RDNTERVKIEEG-LSRKLGNAVACEGRDRVERCEVFGKWRARMSMAGFKLNPVSQKVAESIKARLAPGS-R-VTVNEENGGVSFGWMGRTLTVAS 659
                     ************.**************************************************998877.4.89********************* PP

            GRAS 372 aWr 374
                     aWr
  XP_004496533.1 660 AWR 662
                     **8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.223266644IPR005202Transcription factor GRAS
PfamPF035141.2E-92293662IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MSLPGYTGGG GASDLYGGAA GFSGRSITLQ SNMNNNNINN INNNNISIST PATAHNLNPF  60
YRTQQQQLPT IFLDPSSQIP HRQTSTLIGK RTLAEYQTQN INNLNLHNFN FNNPNNNNNN  120
NTNTVLSNLL LRSVKPRNFQ QASPMSPLSP MDFSNSPPEF INSNAFSSPR LGFPLRTTNP  180
LPINNSFTQN TNFPFQSSNF SQIQNRVTTI SHDSDKKMMD HRLVELEKQL LEDNDYEEGE  240
DAVSVITNNE WSETIQNLIN PTQKPVSSSP TSSTTSLNSS SSSVLSPSSS CSKQSLMEAA  300
SAISEGKMET ASEILARLVQ NPNPISNSDR RLTDCMVSAL KSRINHVENP PQVVELFSKE  360
HAESTQLLFD HSLCFKVSFM AANLGILEAA FEEKKESVNN DMKKICVVDF DMGNGKQYAS  420
LLHELYVRLN GTPATLKITA VAETGDDERL KTVGEFLGRQ AERLRIGFEF KVVSLKLAEL  480
TRDSLGCDSD AFLAVNFAFK LFRMPDESVS TENPRDELLR RVKALAPGVV TVLEQEINTN  540
TAPFVARVAE SCSYYGALFD SIESTMARDN TERVKIEEGL SRKLGNAVAC EGRDRVERCE  600
VFGKWRARMS MAGFKLNPVS QKVAESIKAR LAPGSRVTVN EENGGVSFGW MGRTLTVASA  660
WR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-302816621375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004496533.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4110406e-37AM411040.1 Trifolium pratense AFLP fragment rc0113.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004496533.10.0scarecrow-like protein 8
SwissprotQ9FYR71e-155SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A1S2XZV70.0A0A1S2XZV7_CICAR; scarecrow-like protein 8
STRINGXP_004496533.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62663151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-147SCARECROW-like 8