PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004496891.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

FAR1

Protein Properties

Length: 809aa MW: 93391.2 Da PI: 7.0699

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004496891.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	88.9	7.4e-28	48	135	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+eYAk++GF++++++s++sk+++e+++++f Cs++g + e+++ ++r+ ++++t+Cka+++vkk+ dgkw ++++ ++HnHel p XP_004496891.1 48 SFYQEYAKSMGFTTSIKNSRRSKKTKEFIDAKFACSRYGVTPESDSG---SSRRPSVKKTDCKACMHVKKRPDGKWTIHEFIKDHNHELLP 135 5**************************************999888...7788889*****************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.7E-25	48	135	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.4E-30	255	348	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.285	535	571	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	6.2E-7	537	570	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.4E-8	546	573	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010018	Biological Process	far-red light signaling pathway
GO:0042753	Biological Process	positive regulation of circadian rhythm
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 809 aa Download sequence Send to blast
MSDAVNEEDR RGGAPVASPK RDVAFFEGDR DFEPPNGIEF ESHEAAYSFY QEYAKSMGFT 60 TSIKNSRRSK KTKEFIDAKF ACSRYGVTPE SDSGSSRRPS VKKTDCKACM HVKKRPDGKW 120 TIHEFIKDHN HELLPALAYH FRIHRNVKLA EKNNIDILHA VSERTKKMYV EMSRQSGGCQ 180 NPESLVGDTN YQFDRGQYLS LDEGDAQVML EYFKHIQKEN PNFFYSIDLN EEQRLRNLFW 240 VDAKSINDYL SFNDVVSFDT TYVKSNDKLP FAPFIGVNHH SQPILLGCAL VADETKPTFV 300 WLLKTWLRAM GGQAPKVIVT DQDKALKAAI EEVFPNVRHC FSLWHILEKI PENLSFVIKQ 360 YKNFLPKFNN CIFKSWTDEQ FDMRWWEMVT IFELHDDVWF HSLYEDRKKW VPTYMGDVFL 420 AGMSTSQRSE SMNSFFDKYI HKKITLKEFV KQYGLILQNR YDEEAIADFD TLHKQPALKS 480 PSPWEKQMST IYTHTIFKKF QIEVLGVAGC QSRIEVGDGN VAKFIVQDYE KDEEFLVTWN 540 ELSSEVSCFC RLFEYKGFLC RHALSVLQRC GCSSVPSHYI MKRWTKDAKI REHIADRTRR 600 IQTRVQRYND LCKRAIELSE EGSLSEESYN VAIRTLIDSL KNCVLVNNSN GNGAETGNNG 660 YSLREAEQNQ VTLASKPSKK RNTTRKRKVQ QEQNPILVDA QDSLQQMDNL SSDAMTLNGY 720 YGTQQNVQGL QVQLNLMEPP HDGYYVNQQS MQGLGPLNSM APSHDGYFGT QQSIHGMGGQ 780 LEYRPTTPFG YSLQDEPDQH FHSNNSRNT

Sequence ? help Back to Top

Protein Sequence Length: 809 aa Download sequence Send to blast

MSDAVNEEDR RGGAPVASPK RDVAFFEGDR DFEPPNGIEF ESHEAAYSFY QEYAKSMGFT  60
TSIKNSRRSK KTKEFIDAKF ACSRYGVTPE SDSGSSRRPS VKKTDCKACM HVKKRPDGKW  120
TIHEFIKDHN HELLPALAYH FRIHRNVKLA EKNNIDILHA VSERTKKMYV EMSRQSGGCQ  180
NPESLVGDTN YQFDRGQYLS LDEGDAQVML EYFKHIQKEN PNFFYSIDLN EEQRLRNLFW  240
VDAKSINDYL SFNDVVSFDT TYVKSNDKLP FAPFIGVNHH SQPILLGCAL VADETKPTFV  300
WLLKTWLRAM GGQAPKVIVT DQDKALKAAI EEVFPNVRHC FSLWHILEKI PENLSFVIKQ  360
YKNFLPKFNN CIFKSWTDEQ FDMRWWEMVT IFELHDDVWF HSLYEDRKKW VPTYMGDVFL  420
AGMSTSQRSE SMNSFFDKYI HKKITLKEFV KQYGLILQNR YDEEAIADFD TLHKQPALKS  480
PSPWEKQMST IYTHTIFKKF QIEVLGVAGC QSRIEVGDGN VAKFIVQDYE KDEEFLVTWN  540
ELSSEVSCFC RLFEYKGFLC RHALSVLQRC GCSSVPSHYI MKRWTKDAKI REHIADRTRR  600
IQTRVQRYND LCKRAIELSE EGSLSEESYN VAIRTLIDSL KNCVLVNNSN GNGAETGNNG  660
YSLREAEQNQ VTLASKPSKK RNTTRKRKVQ QEQNPILVDA QDSLQQMDNL SSDAMTLNGY  720
YGTQQNVQGL QVQLNLMEPP HDGYYVNQQS MQGLGPLNSM APSHDGYFGT QQSIHGMGGQ  780
LEYRPTTPFG YSLQDEPDQH FHSNNSRNT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00434	DAP	Transfer from AT4G15090	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004496891.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269\|PubMed:18033885}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235177	0.0	AC235177.1 Glycine max strain Williams 82 clone GM_WBb0007H11, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004496891.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
Swissprot	Q9SWG3	0.0	FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBL	A0A1S2Y0L0	0.0	A0A1S2Y0L0_CICAR; protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
STRING	XP_004496891.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	0.0	FAR1 family protein

Publications ? help Back to Top
Domergue F, et al. Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition. Plant Physiol., 2010. 153(4): p. 1539-54 [PMID:20571114] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]