PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004497094.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

LBD

Protein Properties

Length: 214aa MW: 23166.5 Da PI: 8.2085

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004497094.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	83.6	3e-26	4	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C ++C++ p++ p++q++++ +++k++G++ +l+ll+a+ +++ + +++sl+yeA r+ +P Ga+g+++++++ +++ XP_004497094.1 4 SCNGCRVLRKGCGENCIIKPCLewissPESQANATVFLAKFYGRTGLLNLLAAATRQNAPVVFRSLLYEASGRMVNPTFGALGLFWQGEWSRCEA 98 6********************************************************************************************** PP DUF260 91 kaelallke 99 ++e++l ++ XP_004497094.1 99 AVEAVLSGS 107 *99988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	15.368	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.1E-21	4	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MKVSCNGCRV LRKGCGENCI IKPCLEWISS PESQANATVF LAKFYGRTGL LNLLAAATRQ 60 NAPVVFRSLL YEASGRMVNP TFGALGLFWQ GEWSRCEAAV EAVLSGSRIN DVATVDLNTS 120 STLVGDHVLQ TYDIRHVARG SNIGIKGKTQ FKRVGEVFKP KPRLGSVSST ALLTSGWDTA 180 CTEPGEASSV IQTEPKEIVE TQVNLELTLG FHCQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004497094.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004497094.1	1e-158	LOB domain-containing protein 42
TrEMBL	A0A1S2Y1N3	1e-157	A0A1S2Y1N3_CICAR; LOB domain-containing protein 42
STRING	XP_004497094.1	1e-157	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14785	6	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	1e-57	LOB domain-containing protein 41