PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004497114.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

bZIP

Protein Properties

Length: 423aa MW: 47336.7 Da PI: 6.1494

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004497114.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.9	1.4e-10	139	170	2	33
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLee 33 +e k rr+++NReAAr+sR+RKka++++Le+ XP_004497114.1 139 EEHKSLRRLAQNREAARKSRLRKKAYVQQLEN 170 577999************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.9E-8	138	183	No hit	No description
SMART	SM00338	3.1E-4	138	205	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	8.8E-8	139	171	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.082	140	186	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.75E-8	144	186	No hit	No description
PROSITE pattern	PS00036	0	145	160	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.2E-28	226	300	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence Send to blast
MQSFNATEPA SPFYSHSSFL FRGDEFNLNP TSFFDPHPSF QQHHTVDLTS SSVFGEKSSN 60 VAVVANNLQY GTFNTRIGSA SSGMADNTQN TEDTSTTDID DKNNNQCFST VSWCNGVENG 120 NLVVVDSKDQ CKTKDNNAEE HKSLRRLAQN REAARKSRLR KKAYVQQLEN SRVRLAQIEQ 180 ELQQGVFVAS GVTGDHGHSV VGNGNSGTFA FDMDYARWVD ENQRLINDIR SALNSQTGDN 240 ELHLLVDGVM AHYDELYRLK SIGAKADVFH ILSGLWKTPA ERCFMWLGGF RWSELLKIVR 300 NHVEALTDQQ LIGIYNLQHS SQQAEDALSQ GMEALQQSLS ETLSSNASGD VAEYMGQMAM 360 AMAKLSTLET FLHQADLLRQ QTLQQLRRIL TAHQAARALL VINDFISRIR ALNSLWLACP 420 KEY

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence Send to blast

MQSFNATEPA SPFYSHSSFL FRGDEFNLNP TSFFDPHPSF QQHHTVDLTS SSVFGEKSSN  60
VAVVANNLQY GTFNTRIGSA SSGMADNTQN TEDTSTTDID DKNNNQCFST VSWCNGVENG  120
NLVVVDSKDQ CKTKDNNAEE HKSLRRLAQN REAARKSRLR KKAYVQQLEN SRVRLAQIEQ  180
ELQQGVFVAS GVTGDHGHSV VGNGNSGTFA FDMDYARWVD ENQRLINDIR SALNSQTGDN  240
ELHLLVDGVM AHYDELYRLK SIGAKADVFH ILSGLWKTPA ERCFMWLGGF RWSELLKIVR  300
NHVEALTDQQ LIGIYNLQHS SQQAEDALSQ GMEALQQSLS ETLSSNASGD VAEYMGQMAM  360
AMAKLSTLET FLHQADLLRQ QTLQQLRRIL TAHQAARALL VINDFISRIR ALNSLWLACP  420
KEY

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1. {ECO:0000269\|PubMed:19395638, ECO:0000269\|PubMed:19395639, ECO:0000269\|PubMed:9990857}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004497114.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004497114.1	0.0	transcription factor TGA2.3-like isoform X2
Swissprot	Q9SX27	1e-144	PAN_ARATH; Transcription factor PERIANTHIA
TrEMBL	A0A1S2XZT4	0.0	A0A1S2XZT4_CICAR; transcription factor TGA2.3-like isoform X2
STRING	XP_004497113.1	0.0	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68640.1	1e-146	bZIP family protein

Publications ? help Back to Top
Maier AT,Stehling-Sun S,Offenburger SL,Lohmann JU The bZIP Transcription Factor PERIANTHIA: A Multifunctional Hub for Meristem Control. Front Plant Sci, 2011. 2: p. 79 [PMID:22645551] Chandler JW,Werr W Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation. J. Exp. Bot., 2014. 65(12): p. 3097-110 [PMID:24744428] Wynn AN,Seaman AA,Jones AL,Franks RG Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development. Front Plant Sci, 2014. 5: p. 130 [PMID:24778638] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] de Luis Balaguer MA, et al. Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(36): p. E7632-E7640 [PMID:28827319]