PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004497297.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

WOX

Protein Properties

Length: 273aa MW: 31026.6 Da PI: 5.7787

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004497297.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	71.9	7.3e-23	88	148	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le++F + n +ps+e+++e+A++l +++e++V++WFqNrRa+ k+ XP_004497297.1 88 RQRWTPTPVQLQILERMFDQgNGTPSKEKIKEIAAELgqhgQISETNVYNWFQNRRARSKR 148 89***************99************************************97 PP
2	Wus_type_Homeobox	101	8.7e-33	87	149	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +r+RWtPtp Q++iLe+++++G tP+ke+i++i+aeL ++G+i+++NV++WFQNr+aR+++k XP_004497297.1 87 SRQRWTPTPVQLQILERMFDQGNGTPSKEKIKEIAAELGQHGQISETNVYNWFQNRRARSKRK 149 789***********************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.1E-19	83	153	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.888	84	149	IPR001356	Homeobox domain
SMART	SM00389	1.8E-17	86	153	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.87E-20	87	150	IPR009057	Homeodomain-like
CDD	cd00086	1.48E-15	88	149	No hit	No description
Pfam	PF00046	1.3E-20	88	148	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MCERERMVNM MEFQKQVQNG NVDPMYVKVM TDDQLETLRK QIAVYATICE QLVEMHKTLS 60 TQHDLAGVRL GNIYCDSLMA SGHKITSRQR WTPTPVQLQI LERMFDQGNG TPSKEKIKEI 120 AAELGQHGQI SETNVYNWFQ NRRARSKRKL QNGAPSSNNT ESEVETEVDS KDKKTTKPEE 180 FQSQRNVVIG AENVSFQNPE KCSELQYLNP DSNKTYSMFS SDGNARSTRN LGGSVSVFDE 240 VLSNSRNDYL AGKMEVSGSY NFYQQAEDYN LAG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00617	PBM	Transfer from AT4G35550	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004497297.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004497297.1	0.0	WUSCHEL-related homeobox 8-like
Swissprot	Q5QMM3	6e-81	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A1S2Y091	0.0	A0A1S2Y091_CICAR; WUSCHEL-related homeobox 8-like
STRING	XP_004497297.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1855	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	6e-79	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]