PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004497616.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family HD-ZIP
Protein Properties Length: 236aa    MW: 27684.2 Da    PI: 8.4301
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004497616.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.94.1e-1957110356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+ ++t+eqle+Le+ F+k+ +++ +++ +L+k+lgL+ rq+ vWFqNrR ++k
  XP_004497616.1  57 KKKRLTSEQLETLESSFQKEIKLDPQRKMKLSKELGLQPRQIAVWFQNRRSRWK 110
                     56679************************************************9 PP
2HD-ZIP_I/II113.81.1e-3657148293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     kk+rl++eq+++LE+sF++e kL+p+rK++l++eLglqprq+avWFqnrR R+ktk+lE+ y+ Lk+++d +++e+++L++ev +L+  lke
  XP_004497616.1  57 KKKRLTSEQLETLESSFQKEIKLDPQRKMKLSKELGLQPRQIAVWFQNRRSRWKTKNLEQLYDLLKHQFDVVSKEKQQLQDEVMKLKGMLKE 148
                     9**************************************************************************************88875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.13E-1949114IPR009057Homeodomain-like
PROSITE profilePS5007117.26552112IPR001356Homeobox domain
SMARTSM003894.7E-1755116IPR001356Homeobox domain
PfamPF000461.6E-1657110IPR001356Homeobox domain
CDDcd000865.19E-1657113No hitNo description
Gene3DG3DSA:1.10.10.601.2E-2159119IPR009057Homeodomain-like
PRINTSPR000314.4E-58392IPR000047Helix-turn-helix motif
PROSITE patternPS00027087110IPR017970Homeobox, conserved site
PRINTSPR000314.4E-592108IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010434Biological Processbract formation
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MEWNCNTTHF LHPPDSSLSF LYNYNQTSFQ GMEVKQQGST ETVLEMEKMM KYGNQDKKKR  60
LTSEQLETLE SSFQKEIKLD PQRKMKLSKE LGLQPRQIAV WFQNRRSRWK TKNLEQLYDL  120
LKHQFDVVSK EKQQLQDEVM KLKGMLKEQG SSSSCGKTQV SAVDYHYREM SGEETETIES  180
TSEAALFGSN RVREKIHHHL NNAGGNFCFN MENNYNMNNT VPVLPYWPAV PYNYRS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00486DAPTransfer from AT5G03790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004497616.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004497616.11e-179putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A1S2Y1361e-177A0A1S2Y136_CICAR; putative homeobox-leucine zipper protein ATHB-51
STRINGXP_004497616.11e-178(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33943466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.14e-48homeobox 51