PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004497702.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family FAR1
Protein Properties Length: 441aa    MW: 49378.8 Da    PI: 7.2427
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004497702.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR181.61.3e-25115205191
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                     +fYneY+k++GF +r+++ +ksk++g  t+r+f+C keg r  +k+  +   ++raetrtgCka++++++++  gk++v +++ +HnH+l+p
  XP_004497702.1 115 EFYNEYSKRIGFGIRREYANKSKKDGILTSRRFTCFKEGIRGVDKRG-HPVGEHRAETRTGCKARMVISLDRmIGKYKVVDFVAQHNHPLQP 205
                     6******************************************9999.99999*******************9****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.2E-21115205IPR004330FAR1 DNA binding domain
PROSITE profilePS508119.052151204IPR003657WRKY domain
SuperFamilySSF533359.46E-37251434IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1504.7E-30252426IPR029063S-adenosyl-L-methionine-dependent methyltransferase
TIGRFAMsTIGR014441.9E-29256390IPR006342Methyltransferase FkbM
PfamPF050503.3E-17258425IPR006342Methyltransferase FkbM
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MWLNSINQAF NAEASALSES LKSPASDKYP APSTPQLKQG ARLVDDGDCH EQTTNCSIEK  60
ESVEHDENMN PSSNPLVDCV DKWVNNIHDK IVPESNDNSQ PHMEMKFESE ATAYEFYNEY  120
SKRIGFGIRR EYANKSKKDG ILTSRRFTCF KEGIRGVDKR GHPVGEHRAE TRTGCKARMV  180
ISLDRMIGKY KVVDFVAQHN HPLQPPEYVH MIRSHRHISE VQASQIKGKP FRKPDISVTI  240
QEVLEKAKSE GTNGFVVDVG ANVGMASFAA AAMGFRVLAF EPVFENLQKI CEGIYFNRVG  300
DLVTLFEAAA SDRLGNITVH KLVGRLDNSA VSATGAKMAF KSNEEIAFQV RTVPLDEVIP  360
TSERVLLLKI DVQGWEYHVL KGASKLLSRK GSRAPYLIYE EDERLLQASN SSAKEIRDFL  420
RSVGYHDCTQ HGTDAHCTKK D
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004497702.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0520040.0BT052004.1 Medicago truncatula clone MTYF9_FA_FB_FC1G-D-6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004497702.10.0uncharacterized protein LOC101493633
TrEMBLA0A1S2Y2F10.0A0A1S2Y2F1_CICAR; uncharacterized protein LOC101493633
STRINGXP_004497702.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-22FAR1-related sequence 5