PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004497798.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 251aa    MW: 29579.4 Da    PI: 9.2814
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004497798.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.14.2e-182168148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd ll+d+v+++G g+W+++ar  g++R +k+c++rw +yl
   XP_004497798.1 21 KGPWTGEEDRLLIDYVRMHGEGRWNSVARLTGLKRNGKSCRLRWVNYL 68
                     79******************************9*************97 PP
2Myb_DNA-binding53.27.1e-1774118147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  T++E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
   XP_004497798.1  74 RGQITPQEESIILELHARWGNR-WSTIARNLP-GRTDNEIKNYWRTH 118
                      7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.3121668IPR017930Myb domain
SMARTSM007175.9E-162070IPR001005SANT/Myb domain
SuperFamilySSF466891.47E-2920115IPR009057Homeodomain-like
PfamPF002492.0E-162168IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-232275IPR009057Homeodomain-like
CDDcd001672.72E-112368No hitNo description
PROSITE profilePS5129425.39469123IPR017930Myb domain
SMARTSM007172.4E-1573121IPR001005SANT/Myb domain
PfamPF002491.1E-1474118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2476122IPR009057Homeodomain-like
CDDcd001671.94E-1078119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MYWHGVMAGQ MGHMEEEVWR KGPWTGEEDR LLIDYVRMHG EGRWNSVARL TGLKRNGKSC  60
RLRWVNYLRP DLKRGQITPQ EESIILELHA RWGNRWSTIA RNLPGRTDNE IKNYWRTHFK  120
KKAKNPSDAA EKAKNRFMRK QLFHQQQQQL QQQQQFNLDM KSVMSLVEEN NINNYRVPYI  180
SQARQEMFNM CPNNIEEQGY FMLNGNSSVP EASVEDILWD GLWNLDDVHG NFSVANATNK  240
NGLYNLVSPY C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-272112327128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004497798.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1743128e-74AC174312.19 Medicago truncatula clone mth2-157b7, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004497798.10.0transcription factor MYB24-like
TrEMBLA0A1S2Y2L70.0A0A1S2Y2L7_CICAR; transcription factor MYB24-like
STRINGXP_004497798.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.13e-86myb domain protein 305