PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004497834.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

C2H2

Protein Properties

Length: 162aa MW: 18610.3 Da PI: 6.0001

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004497834.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.4	0.00049	23	45	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C++ F++ L H++ H XP_004497834.1 23 YDCTFCKRGFTNARALGGHMNIH 45 88*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	7.4E-5	20	49	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	8.42E-7	20	50	No hit	No description
PROSITE profile	PS50157	11.593	23	50	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	25	45	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010252	Biological Process	auxin homeostasis
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MARSKTTSSE ESDEQEVQTK RSYDCTFCKR GFTNARALGG HMNIHRKERT NYEANQTTHN 60 FMCSSSFVPI VSRQPSTYYC LLEPTRNYDM YIHPSTTNPR NPSPDFQYDF LNTSTESLME 120 TNLSLQIGSS NECNDQVWRG TEKDGEGVNL ELRLGHSSYS NY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004497834.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004497834.1	1e-120	zinc finger protein 11-like
TrEMBL	A0A1S2Y2P2	1e-119	A0A1S2Y2P2_CICAR; zinc finger protein 11-like
STRING	XP_004497834.1	1e-119	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1686	30	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43540.1	6e-14	C2H2 family protein