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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | XP_004498019.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 217aa MW: 25322.8 Da PI: 6.7827 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 22.1 | 4.9e-07 | 91 | 162 | 18 | 90 |
FAR1 18 kskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90
+++ + r+++ tk + C ++gk ++ k+ + r++ + +++C +l+ ++++ ++w+++ + HnHela
XP_004498019.1 91 SETATARSRTKTKLILGCERSGKYRHWKNP--NLTRSTWTRKCECPFRLRGTRSSvGDEWYLHVICGLHNHELA 162
333446777789999**********99988..78888999999******9999999****************97 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF58113 | 7.32E-5 | 9 | 52 | No hit | No description |
| Pfam | PF08731 | 5.5E-5 | 65 | 161 | IPR014842 | Transcription factor AFT |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 217 aa Download sequence Send to blast |
MDQGGDNSDK MYEGLEPDFE EMYDDLDPYF EEMYDDVKPN FDAMNDRVEP VMIDLIDVFT 60 TGMMFDTRDE LLKWARNVGR ENGIVVVIFR SETATARSRT KTKLILGCER SGKYRHWKNP 120 NLTRSTWTRK CECPFRLRGT RSSVGDEWYL HVICGLHNHE LAKKLTGHSF LCRLSQNEKN 180 VLGDMTKNLV KPKNILMTLR DHNVESLTTI KQVYNAR |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | XP_004498019.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_004498019.1 | 1e-163 | uncharacterized protein LOC101509075 | ||||
| TrEMBL | A0A1S2Y317 | 1e-162 | A0A1S2Y317_CICAR; uncharacterized protein LOC101509075 | ||||
| STRING | XP_004498019.1 | 1e-163 | (Cicer arietinum) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF180 | 11 | 22 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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