PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004498111.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

TCP

Protein Properties

Length: 226aa MW: 24443.3 Da PI: 9.7933

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004498111.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	121.4	1e-37	26	188	2	122
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg........ 88 a+kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as+++ ++++ + + XP_004498111.1 26 AVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSSLSEHKPFH-----Ppspfilgk 115 689*************************************************************88888666211111111.....122344455 PP TCP 89 ........................................kaaksaa.kskksqksaasalnlakesrakarara 122 ++ +s+ + +++q++++ + ++++++++++ +a XP_004498111.1 116 rlrseqddavsvaaptappalwalpsrpdfaqlwsfaaaaAQPPSEVlSISPQQQQHN--SLFHHQQQQQQQHQA 188 5555555666677778888888888888888888888886333333323333333333..333333333333222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	28.209	32	86	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	6.7E-33	32	186	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MSNCKETTNA VTVTNGTTTD SQKTIAVKKP PSKDRHSKVD GRGRRIRMPI ICAARVFQLT 60 RELGHKSDGQ TIEWLLRQAE PSIIAATGTG TTPASFSSLS EHKPFHPPSP FILGKRLRSE 120 QDDAVSVAAP TAPPALWALP SRPDFAQLWS FAAAAAQPPS EVLSISPQQQ QHNSLFHHQQ 180 QQQQQHQASM GEASAARLGN YLPGHLNLLA SLSGNGNSGR GDDEHH

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004498111.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004498111.1	1e-167	transcription factor TCP7-like
Swissprot	Q9FMX2	1e-79	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A1S2Y206	1e-166	A0A1S2Y206_CICAR; transcription factor TCP7-like
STRING	XP_004498111.1	1e-166	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5469	31	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	8e-50	TCP family protein