PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004498112.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

TCP

Protein Properties

Length: 230aa MW: 25057 Da PI: 9.3369

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004498112.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	121.3	1.1e-37	33	187	2	119
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg........ 88 a+kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as+++ ++++ + XP_004498112.1 33 AVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSSLSEHKPFL-----Ppspfilgk 122 689*************************************************************88888666111111111.....122333444 PP TCP 89 ...................................................kaaksaakskksqksaasalnlakesrakar 119 + + + ++++++++++ XP_004498112.1 123 rlrseqddavavaahpappalwrpdfaqlwsfaaaaqpppevlsispqqqqH---------------N--SLFHHQQQQQQQ 187 4444455566677777778888888888888887654444444443332211...............2..222221111111 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	8.5E-33	39	188	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.209	39	93	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MSNCKETTNA VTITNGATTT TTEPETTQRN TIAVKKPPSK DRHSKVDGRG RRIRMPIICA 60 ARVFQLTREL GHKSDGQTIE WLLRQAEPSI IAATGTGTTP ASFSSLSEHK PFLPPSPFIL 120 GKRLRSEQDD AVAVAAHPAP PALWRPDFAQ LWSFAAAAQP PPEVLSISPQ QQQHNSLFHH 180 QQQQQQQQHQ ASMGEASAAR LGNYLPGHLN LLASLSGGNG NSGRDDDEHR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004498112.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004498112.1	1e-170	transcription factor TCP7-like
Swissprot	Q9FMX2	9e-75	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A1S2Y382	1e-169	A0A1S2Y382_CICAR; transcription factor TCP7-like
STRING	XP_004498112.1	1e-170	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5469	31	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	4e-50	TCP family protein