PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004498386.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

NF-YB

Protein Properties

Length: 137aa MW: 15240.2 Da PI: 7.6288

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004498386.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	118.6	2.9e-37	24	112	7	95
NF-YB 7 flPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 +P++ ++rim++++Pa+akis+ ake++q cvsefi+ +t+eas++c+ e+rk ++++dl+wa+ +lGfedy pl yl +yr+ e+ XP_004498386.1 24 RMPVTHLTRIMQRAIPAQAKISNGAKESMQFCVSEFITIITTEASERCKFEHRKIVTAEDLIWAMDKLGFEDYTGPLVFYLDNYRKNEA 112 69***********************************************************************************9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.2E-34	13	114	IPR009072	Histone-fold
SuperFamily	SSF47113	9.63E-29	22	113	IPR009072	Histone-fold
Pfam	PF00808	1.6E-18	24	88	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	2.0E-8	52	70	No hit	No description
PRINTS	PR00615	2.0E-8	71	89	No hit	No description
PRINTS	PR00615	2.0E-8	90	108	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 137 aa Download sequence Send to blast
MEHGSPSSNH SRKAQSSSGS EKLRMPVTHL TRIMQRAIPA QAKISNGAKE SMQFCVSEFI 60 TIITTEASER CKFEHRKIVT AEDLIWAMDK LGFEDYTGPL VFYLDNYRKN EAQFTAMAIA 120 HGLNKDASNS GSGNDQP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	3e-33	25	109	13	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004498386.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004498386.1	1e-101	nuclear transcription factor Y subunit B-3-like
TrEMBL	A0A1S2Y2L3	1e-99	A0A1S2Y2L3_CICAR; nuclear transcription factor Y subunit B-3-like
STRING	XP_004498386.1	1e-100	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21178	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	1e-35	nuclear factor Y, subunit B3