PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004498890.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family GATA
Protein Properties Length: 284aa    MW: 31616.1 Da    PI: 9.2037
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004498890.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.86e-18154187134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     Cs C+t +TplWR+gp g+ktLCnaCG+++rk +
  XP_004498890.1 154 CSDCNTNSTPLWRSGPMGPKTLCNACGIRQRKAR 187
                     *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577165.7E-13147196No hitNo description
PROSITE profilePS5011412.624148184IPR000679Zinc finger, GATA-type
SMARTSM004013.6E-19148199IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.9E-15152187IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.99E-13153190No hitNo description
PfamPF003202.1E-15154187IPR000679Zinc finger, GATA-type
PROSITE patternPS003440154179IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MTPVSLNPQP QNAQFFISPI NQDSTPTFFN LLDPTQTTFQ NFGDFRQNHD HQGDDNKVVL  60
HDGSSSNEQV YNSSEEPARS ARDTKNLTSL EEDSKSGHGS TKWMSSKMRL MKKMMRPSSS  120
GSTDKAIMMN AQRYENRYSQ TSPTRNNNNT VRVCSDCNTN STPLWRSGPM GPKTLCNACG  180
IRQRKARRAM AEATNGSTKT KVHNKDKKKP LVNDFTQFKH KNKSTSGSSS TTTTTAGSSQ  240
DVKKLECYAL NLRENSDFEG AFLSDEVAEA ALLLMDISCG YIYS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004498890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0513824e-39BT051382.1 Medicago truncatula clone MTYF1_F2_F3_F41G-J-17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004498890.10.0putative GATA transcription factor 22
TrEMBLA0A1S2Y5L10.0A0A1S2Y5L1_CICAR; putative GATA transcription factor 22
STRINGXP_004498890.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.11e-19GATA family protein