PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004498934.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family TALE
Protein Properties Length: 388aa    MW: 44765.9 Da    PI: 6.9046
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004498934.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.23.2e-093153502055
                     HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
        Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                     +k +yps++e+  LA+++gL+++q+ +WF N+R ++
  XP_004498934.1 315 YKWPYPSESEKVALAESTGLDQKQINNWFINQRKRH 350
                     4679*****************************885 PP
2ELK35.91.6e-12270291122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELK++Ll+KYsgyL+sLkqE+s
  XP_004498934.1 270 ELKNHLLKKYSGYLSSLKQELS 291
                     9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012557.6E-21127171IPR005540KNOX1
PfamPF037901.7E-21128170IPR005540KNOX1
SMARTSM012565.9E-29178229IPR005541KNOX2
PfamPF037914.9E-24183228IPR005541KNOX2
PfamPF037897.7E-10270291IPR005539ELK domain
SMARTSM011881.0E-6270291IPR005539ELK domain
PROSITE profilePS5121311.243270290IPR005539ELK domain
PROSITE profilePS5007113.119290353IPR001356Homeobox domain
SuperFamilySSF466897.7E-20291365IPR009057Homeodomain-like
SMARTSM003891.8E-13292357IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-27295356IPR009057Homeodomain-like
CDDcd000865.02E-12302354No hitNo description
PfamPF059201.1E-16310349IPR008422Homeobox KN domain
PROSITE patternPS000270328351IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MEAYTNNHLS ENSSPNPNQS SRPNFLYSSS SGNNQHHHHH NHNHHHHDDH NQIPINTFHL  60
QSSGSSQCFQ VQPQQHSIVK TEANNSSQLH TPIFPYPLMR TNIINPHTNV MHNHHQGGGS  120
PSSSEAEAIK AKIIAHPQYS TLLEAYMDCQ KIGAPPEVVA RLVSARQEFE AKQRSSINSR  180
ESSKDPELDQ FMEAYYDMLV KYREELTRPI QEAMDFMKRI ENQLNMLCNG PVRIFPDDKC  240
EGVGSSEEDQ ENSGGETELP EIDPRAEDRE LKNHLLKKYS GYLSSLKQEL SKKKKKGKLP  300
KEARQKLLNW WELHYKWPYP SESEKVALAE STGLDQKQIN NWFINQRKRH WKPSEDMQFM  360
VMDGLHPQNA TLYMDAHYMP DGPYRLGP
Functional Description ? help Back to Top
Source Description
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00675ChIP-seqTransfer from GRMZM2G017087Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004498934.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1280570.0EF128057.1 Medicago truncatula class I KNOX homeobox transcription factor (KNOX2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004498934.10.0homeotic protein knotted-1 isoform X1
RefseqXP_004498975.20.0homeotic protein knotted-1 isoform X2
RefseqXP_012570771.10.0homeotic protein knotted-1 isoform X1
SwissprotO041351e-170KNAP2_MALDO; Homeobox protein knotted-1-like 2
TrEMBLA0A1S2Y5540.0A0A1S2Y554_CICAR; homeotic protein knotted-1 isoform X1
STRINGXP_004498934.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45843246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-130KNOTTED-like from Arabidopsis thaliana