PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004498946.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

bHLH

Protein Properties

Length: 426aa MW: 46312.1 Da PI: 6.6443

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004498946.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.1	4.2e-10	269	317	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+el+P + +k Ka +L + ++Y++sLq XP_004498946.1 269 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 317 58************************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.89E-17	264	334	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.45E-11	264	321	No hit	No description
PROSITE profile	PS50888	15.485	266	316	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-16	267	334	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.8E-7	269	317	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.6E-10	272	322	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009637	Biological Process	response to blue light
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence Send to blast
MGGKENAMEF QHGNENIIMN SSCPSSEMDI SSVSNMGKPS SDAPNQHHHH FLSSSAWDNP 60 LVSLSQAHTF GGSSMVSHNE FANANSTYPL VLENHQSHHL VQYMSDSNLG GMIHKVPSYG 120 SGSFSEMVGS FSQHGSGGDH VTNTSGYSIP PQQHYNPIKD AGTQRGSING EQSQVEDSIH 180 EDGGTGSAPS ANRRKRGLDQ NSTFSPNKNA EGDGVKDSPR KISDGPKENE KKPKVEQLGK 240 QVKENSQSGG DASKDNFIHV RARRGQATNS HSLAERVRRE KISERMRLLQ ELVPGCNKIT 300 GKAVMLDEII NYVQSLQQQV EFLSMKLATV NPELNFDVER ILSKDILQSR MGLGIGGFMP 360 GISSSHPFPN ASFQGNMAGM PSSSTQFPSL PQNVLDHDFQ SFYGMGYDSN TALDNLGPNG 420 RLKPEL

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence Send to blast

MGGKENAMEF QHGNENIIMN SSCPSSEMDI SSVSNMGKPS SDAPNQHHHH FLSSSAWDNP  60
LVSLSQAHTF GGSSMVSHNE FANANSTYPL VLENHQSHHL VQYMSDSNLG GMIHKVPSYG  120
SGSFSEMVGS FSQHGSGGDH VTNTSGYSIP PQQHYNPIKD AGTQRGSING EQSQVEDSIH  180
EDGGTGSAPS ANRRKRGLDQ NSTFSPNKNA EGDGVKDSPR KISDGPKENE KKPKVEQLGK  240
QVKENSQSGG DASKDNFIHV RARRGQATNS HSLAERVRRE KISERMRLLQ ELVPGCNKIT  300
GKAVMLDEII NYVQSLQQQV EFLSMKLATV NPELNFDVER ILSKDILQSR MGLGIGGFMP  360
GISSSHPFPN ASFQGNMAGM PSSSTQFPSL PQNVLDHDFQ SFYGMGYDSN TALDNLGPNG  420
RLKPEL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269\|PubMed:23161888, ECO:0000269\|PubMed:24130508}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00135	DAP	Transfer from AT1G10120	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004498946.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004498946.1	0.0	transcription factor bHLH74 isoform X1
Swissprot	Q6NKN9	1e-72	BH074_ARATH; Transcription factor bHLH74
TrEMBL	A0A1S2Y3Z4	0.0	A0A1S2Y3Z4_CICAR; transcription factor bHLH74 isoform X1
STRING	XP_004498946.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7585	33	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10120.1	4e-75	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]