PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004498953.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family GRF
Protein Properties Length: 675aa    MW: 73913.2 Da    PI: 7.3025
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004498953.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.52.8e-24224268145
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                     d+epgrCrRtDGKkWRCsr+++ ++k+CErH++rgr+rsrk++e 
  XP_004498953.1 224 DPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVEG 268
                     79****************************************985 PP
2QLQ59.11.2e-20154190137
             QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                     ++FT++Q+++L++Q+l+yKy+ an+ vP++Ll +i+k
  XP_004498953.1 154 GPFTPSQWMELEHQALIYKYITANVAVPHHLLIPIRK 190
                     59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.6E-12154190IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.226155190IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088808.3E-15155189IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.847224268IPR014977WRC domain
PfamPF088791.4E-20225267IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0061062Biological Processregulation of nematode larval development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MDLGVMSLEG LVSSETGLVS SDPEQKNKWY GSSLLKQQRS ETSNEDLLLR SFKLAKTHDD  60
DDDKTTTMMF QQQRNNNTSL LRSNVTTTSL FSDGQHQQQM LSFSSPKSET FLLDKTTQNA  120
TLPYHHAYHP MSSYNRNTGY SSGNMHGGLT CGRGPFTPSQ WMELEHQALI YKYITANVAV  180
PHHLLIPIRK ALDSAGLSNF STALLRPNAL GWGGFHLGYS NNTDPEPGRC RRTDGKKWRC  240
SRDAVVDQKY CERHMNRGRH RSRKPVEGQS GQALTTTNPT TTTTTTTATT TTSIIPPSGS  300
KQINAASPSS SIVVPGNTAS NTLTFAHQEQ SKNMNNFLSP DNASAANTIN RMFMNNNKEN  360
NSTTERMQQD GPALPMLPPT LELKPKENHP FIIQKHHIPY DESSRNNEFG FVTSDSLLNP  420
SQKTSTLLGS RTFGSSSQNP ANRDTASQHS LRHFIDDFPK THSDHHHNNR SSGFSWPELD  480
MQSDRTQLSI STPMTSSDFM SFSSSAANEK LTLSPLRLSR ELDPIQMGLG VGNSTSFNNN  540
ESSNTSTNSN ANATSRQANW IPITWESSMG GPLGEVLHLS SITCNASEDH YSSINNNNNN  600
NSSALNLMTD GWDNHNSPPM GSSPTGVLQK TAFGSLSNSS AGSSPRAENN KTQESASLCN  660
DLLGSTLGGN ASFTP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004498953.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150362e-67AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004498953.10.0growth-regulating factor 1-like
TrEMBLA0A1S2Y3V90.0A0A1S2Y3V9_CICAR; growth-regulating factor 1-like
STRINGXP_004498953.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20853481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.13e-82growth-regulating factor 2