PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004498976.2
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family HD-ZIP
Protein Properties Length: 309aa    MW: 35518.4 Da    PI: 6.5101
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004498976.2genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox573.2e-18130184256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tkeq ++L+e F+++++++ ++++ LAk+l+L++rqV vWFqN+Ra++k
  XP_004498976.2 130 RKKLRLTKEQSKVLKENFREHSTLNPRQKQTLAKELNLSDRQVEVWFQNQRARRK 184
                     78889************************************************98 PP
2HD-ZIP_I/II108.45.3e-35130218190
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                     +kk+rl+keq+k+L e+F+e+++L+p++K++la+eL+l+ rqv+vWFqn+RAR k kq+E+++e Lk+++++l+ee+++L+keveeL+ +
  XP_004498976.2 130 RKKLRLTKEQSKVLKENFREHSTLNPRQKQTLAKELNLSDRQVEVWFQNQRARRKVKQTESECELLKKCCESLREEKKKLQKEVEELE-A 218
                     69*************************************************************************************8.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.21E-17120187IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.8E-17123180IPR009057Homeodomain-like
PROSITE profilePS5007117.135126186IPR001356Homeobox domain
SMARTSM003895.2E-15128190IPR001356Homeobox domain
CDDcd000867.36E-16129187No hitNo description
PfamPF000469.1E-16130184IPR001356Homeobox domain
PROSITE patternPS000270161184IPR017970Homeobox, conserved site
PfamPF021833.1E-7186219IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.9E-14186230IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MDFDYTSTIE IQLDLGLALH DQYLHKDCDG HRKKESKKKK MENSSKCNMA YPSLTLGPLY  60
EDENVNNQDE ASKIESYDQN LHTQVTSPSM ECSFSNSTSI KREIGEEFDV EIEKVPTNMG  120
DHVDENGNPR KKLRLTKEQS KVLKENFREH STLNPRQKQT LAKELNLSDR QVEVWFQNQR  180
ARRKVKQTES ECELLKKCCE SLREEKKKLQ KEVEELEAMQ TVAAPFYMQI IPAPTLTICP  240
SCEILCGRNN TNNASSPTTT TLLIGSNSHN PFYIQNNNNN NNNNNNNNNN NNNNNNNNNK  300
IYPFPHPSS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004498976.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004498976.20.0homeobox-leucine zipper protein HAT9-like
TrEMBLA0A1S2Y4160.0A0A1S2Y416_CICAR; homeobox-leucine zipper protein HAT9-like
STRINGXP_004498976.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114433107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.15e-33homeobox from Arabidopsis thaliana