PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004499103.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family B3
Protein Properties Length: 222aa    MW: 25449.7 Da    PI: 7.7971
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004499103.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.95e-20351161299
                     HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      ++rl lp +f   h+ kk+ +++++l+ +sg +W++ l  + +++ +++++GW++F+k++ Lke+Df+vFk++g+s f   v vf++
  XP_004499103.1  35 FHQRLALPQTFS--HNVKKKLPQDVSLKGPSGAVWNIML--TTRDDIVYFADGWQQFAKDHALKENDFLVFKYNGESVF--EVLVFDR 116
                     4678*******7..545566999****************..999999****************************9999..8888886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.16E-2323116IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.63624117IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-2325116IPR015300DNA-binding pseudobarrel domain
CDDcd100176.71E-1926115No hitNo description
SMARTSM010191.3E-1627117IPR003340B3 DNA binding domain
PfamPF023622.1E-1636116IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MGGEQNINIK SSWEQDIYWN HFQFNHFVQF LTKDFHQRLA LPQTFSHNVK KKLPQDVSLK  60
GPSGAVWNIM LTTRDDIVYF ADGWQQFAKD HALKENDFLV FKYNGESVFE VLVFDRESLC  120
EKATSYFVGK YKGCCCKEKD TNNISNAGVE CGSPATLVHL NNIAEPSKTT KGKTSNDHVE  180
SCPKEFMPDA VTKTRTQKKR GRPPKVSNSF DDEFGDLFRE RC
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004499103.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004499104.21e-103B3 domain-containing protein REM16-like
TrEMBLA0A1S2Y6231e-102A0A1S2Y623_CICAR; B3 domain-containing protein REM16-like
STRINGXP_004499103.11e-167(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44462658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.16e-42B3 family protein