PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004499158.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB_related
Protein Properties Length: 97aa    MW: 11179.7 Da    PI: 9.6767
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004499158.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.58.2e-10649344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT+   +++ +a + + ++   +W + ar +g g+t +++k ++
   XP_004499158.1  6 SWTPKQNKRFENALAIYDKDtpdRWQKLARAVG-GKTVEEVKRHY 49
                     7********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.949257IPR017884SANT domain
SMARTSM007171.9E-7355IPR001005SANT/Myb domain
SuperFamilySSF466897.41E-13560IPR009057Homeodomain-like
PfamPF002491.1E-6649IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-5659IPR009057Homeodomain-like
CDDcd001672.30E-6649No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MASSSSWTPK QNKRFENALA IYDKDTPDRW QKLARAVGGK TVEEVKRHYE ILVEDLKHIE  60
QGLVPLPKYR NASTIGSSIK SYSYIDEEQR LKVLSLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-31297693RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004499158.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004499158.11e-66protein RADIALIS-like 4
SwissprotQ1A1731e-32RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A1S2Y4D63e-65A0A1S2Y4D6_CICAR; protein RADIALIS-like 4
STRINGXP_004499158.15e-66(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.26e-35RAD-like 6