PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004499446.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ZF-HD
Protein Properties Length: 91aa    MW: 10045.3 Da    PI: 8.8561
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004499446.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer104.56.7e-332379360
     ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60
                    ++rY eC+kNhAa++Gg+avDGC+Efm++ + egt+ +l+CaACgCHRnFHRrev++e
  XP_004499446.1 23 NIRYGECQKNHAANIGGYAVDGCREFMAN-TGEGTIGSLTCAACGCHRNFHRREVHTE 79
                    789*************************9.7779********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-29188IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047703.5E-292476IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.0E-272576IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.2392675IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048509Biological Processregulation of meristem development
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MKKRQVVVKR DVANNTSSSV IRNIRYGECQ KNHAANIGGY AVDGCREFMA NTGEGTIGSL  60
TCAACGCHRN FHRREVHTEV VCEYSPPNSS R
Functional Description ? help Back to Top
Source Description
UniProtInhibits zinc finger homeodomain (ZHD) transcription factors by interacting with them to prevent both their nuclear localization and their DNA-binding properties. Involved in integrating signals from multiple hormones by regulating the expression of specific genes. Promotes the formation of ectopic shoot meristems on leaf margins. {ECO:0000269|PubMed:21455630}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004499446.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1472012e-78AC147201.19 Medicago truncatula clone mth2-117n1, complete sequence.
GenBankBT1430072e-78BT143007.1 Medicago truncatula clone JCVI-FLMt-2L7 unknown mRNA.
GenBankCU0248962e-78CU024896.7 M.truncatula DNA sequence from clone MTH2-150P22 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004499446.13e-62mini zinc finger protein 3-like
SwissprotQ2Q4931e-39MIF3_ARATH; Mini zinc finger protein 3
TrEMBLA0A1S2Y5456e-61A0A1S2Y545_CICAR; mini zinc finger protein 3-like
STRINGXP_004499446.11e-61(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF155034100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18835.14e-42mini zinc finger