PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004499778.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

NF-YC

Protein Properties

Length: 295aa MW: 32732.1 Da PI: 4.9065

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004499778.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	60.9	2.6e-19	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t++ ++ +v++ ++fdfl div r XP_004499778.1 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNALHLKHCVQSYNVFDFLRDIVGR 86 5789**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.5E-26	2	72	IPR009072	Histone-fold
SuperFamily	SSF47113	1.06E-20	3	98	IPR009072	Histone-fold
Pfam	PF00808	1.5E-19	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MKKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YEITLQRGAK 60 TMNALHLKHC VQSYNVFDFL RDIVGRVPDY GHGHSHSEAG ADDRAVPKRR KAAAGDDGND 120 SDEETKRSKM LELSHTGGTG RGRGRGRGRG RGRGARTAEK ETFHQQVESE PCTSIQQSSK 180 EVPDASMAID NVPEQKDLPK ENNNAVHEES TQSLRNIDLN ANLHENEDKL NTDTTITQAS 240 LPEPAATTTT DMQHEEIPGW SLSDVDKMAI DTLQLAANIN SRIEEDEEDY DEEEG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	3e-23	2	72	5	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	142	152	RGRGRGRGRGR
2	144	153	RGRGRGRGRG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004499778.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ918300	0.0	JQ918300.1 Medicago truncatula nuclear transcription factor Y subunit C8 (NF-YC8) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004499778.1	0.0	dr1-associated corepressor homolog isoform X1
TrEMBL	A0A1S2Y5S0	0.0	A0A1S2Y5S0_CICAR; dr1-associated corepressor homolog isoform X1
STRING	XP_004499778.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1728	34	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	8e-71	nuclear factor Y, subunit C11