PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004499797.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

MYB_related

Protein Properties

Length: 92aa MW: 10354.6 Da PI: 9.9729

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004499797.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.4	3.9e-09	10	58	2	47
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 g+W+t E + + +a + + ++ +W+ +a+ +g g+t+ ++k ++ + XP_004499797.1 10 GSWSTKENKAFERALAVFDKDtpdRWSNVAHAVGGGKTADEVKRHYEHL 58 89********************************************765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.806	4	59	IPR017877	Myb-like domain
SMART	SM00717	4.0E-8	8	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.8E-5	9	60	IPR009057	Homeodomain-like
Pfam	PF00249	5.4E-7	10	56	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	9.72E-13	10	67	IPR009057	Homeodomain-like
CDD	cd00167	0.00776	16	59	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 92 aa Download sequence Send to blast
MASSSMSASG SWSTKENKAF ERALAVFDKD TPDRWSNVAH AVGGGKTADE VKRHYEHLLR 60 DVRHIESGQV PFPKYKNIGG LDEEKRLRNL KL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	7e-35	1	92	1	92	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269\|PubMed:15790677}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004499797.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269\|PubMed:15790677, ECO:0000269\|PubMed:16236768}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004499797.1	2e-63	protein RADIALIS-like 3
Swissprot	Q58FS3	1e-34	RAD_ANTMA; Transcription factor RADIALIS
TrEMBL	A0A1S2Y7F5	6e-62	A0A1S2Y7F5_CICAR; protein RADIALIS-like 3
STRING	XP_004499797.1	9e-63	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF154	34	280

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39250.1	5e-32	RAD-like 1

Publications ? help Back to Top
Corley SB,Carpenter R,Copsey L,Coen E Floral asymmetry involves an interplay between TCP and MYB transcription factors in Antirrhinum. Proc. Natl. Acad. Sci. U.S.A., 2005. 102(14): p. 5068-73 [PMID:15790677] Costa MM,Fox S,Hanna AI,Baxter C,Coen E Evolution of regulatory interactions controlling floral asymmetry. Development, 2005. 132(22): p. 5093-101 [PMID:16236768] Stevenson CE, et al. Crystallization and preliminary X-ray analysis of the RAD protein from Antirrhinum majus. Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun., 2005. 61(Pt 10): p. 885-8 [PMID:16511186] Stevenson CE, et al. Crystal structure of the MYB domain of the RAD transcription factor from Antirrhinum majus. Proteins, 2006. 65(4): p. 1041-5 [PMID:17044043]