PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004499871.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C3H
Protein Properties Length: 463aa    MW: 52270.6 Da    PI: 5.7398
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004499871.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.45.8e-093555526
                    --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                    +C+++++ G C yG+rC++ H+
  XP_004499871.1 35 ICSYYQK-GSCAYGSRCRYKHV 55
                    7******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.389127IPR000571Zinc finger, CCCH-type
SMARTSM003560.0057226IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-6325IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.6473057IPR000571Zinc finger, CCCH-type
SMARTSM003560.00263056IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-53154IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-53554IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-63555IPR000571Zinc finger, CCCH-type
SMARTSM0035648126150IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.601130151IPR000571Zinc finger, CCCH-type
SuperFamilySSF578501.24E-12183262No hitNo description
Gene3DG3DSA:3.30.40.102.0E-10186257IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001625.94E-4192257No hitNo description
PROSITE profilePS5008911.884193256IPR001841Zinc finger, RING-type
PfamPF000972.5E-6193255IPR018957Zinc finger, C3HC4 RING-type
SMARTSM001841.9E-5193255IPR001841Zinc finger, RING-type
PROSITE patternPS005180217226IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010312.718285314IPR000571Zinc finger, CCCH-type
SMARTSM003562285313IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MSNRVCKFHA RGVCLKGEQC DFSHQRKDTP VDATICSYYQ KGSCAYGSRC RYKHVRPSEA  60
SSSASMVSDS AVPVSNRFGK VSSNWVPKGT KVPSPDKRVT NLQRKHQEFI GNSDFGESST  120
ASARPHEQLF CKYAAANCPN RDRCTRIHGN QCLYCRKYCL HPVDKKEKEN HLRTCDKKEK  180
YLLALKNSEE IECNVCLERV LSKPKPSECK FGLLPECDHA FCLSCIRNWR SSSAPTSGLE  240
INSINANTVR TCPVCRKLSY FVIPSGIWYT SKEEKQEIID NYKESCRLID CKHFSGGNGN  300
CPFGAGCFYK HTVRPGSYTW VHNRPPHNRP PPPRRNQNNF GMNDVLEMLG EVDLSGGEFY  360
SIMRDMDIFE GMDPFEMMAI ADSLAGGSAP CMGPFDSNDE GDDEFDLFQM AALSEALADG  420
VDDFGPDDFY DEMDPMDAAL LSMMMHSHME EDDEDEEYSD EQY
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004499871.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004499871.10.0E3 ubiquitin-protein ligase makorin-like isoform X1
SwissprotE0X9N41e-100C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A1S2Y5S60.0A0A1S2Y5S6_CICAR; E3 ubiquitin-protein ligase makorin-like isoform X1
STRINGXP_004499871.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF151431113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-98C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]