PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004500020.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

LBD

Protein Properties

Length: 272aa MW: 30041.3 Da PI: 4.9727

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004500020.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	128.5	3e-40	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lr+kC+++C +apyf ++p++fa vh++FGas+v kllk+l+ e+reda++sl+yeAe r+rdPvyG+vg+i+ lqq+l++ ++el+ XP_004500020.1 7 PCAACKFLRQKCTQECYFAPYFSPDNPQRFASVHRVFGASKVAKLLKELHAEDREDAVKSLAYEAESRIRDPVYGCVGFISVLQQRLKEIRNELQ 101 7********************************************************************************************** PP DUF260 96 llkee 100 +k+e XP_004500020.1 102 IAKKE 106 99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.821	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.9E-40	7	104	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MSSSNSPCAA CKFLRQKCTQ ECYFAPYFSP DNPQRFASVH RVFGASKVAK LLKELHAEDR 60 EDAVKSLAYE AESRIRDPVY GCVGFISVLQ QRLKEIRNEL QIAKKELLNY NFNPQTMNYL 120 LANPGTVIMP QQQQQQQWNP QFAGLNNGSN NFGNDTVGGV GELVVSDAQQ HQEQEFLEAQ 180 RFVAATQQEY FLRLGGGGVG VGVGVASSLG MGNFENGGGD YYRIEQQGEE QQQNYVALGN 240 GHPIEAQLMF SPQNQETSED GRSVGSAHPS CN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-44	4	110	8	114	LOB family transfactor Ramosa2.1
5ly0_B	2e-44	4	110	8	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004500020.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004500020.1	0.0	protein LATERAL ORGAN BOUNDARIES-like
Swissprot	Q9FKZ3	1e-53	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	A0A1S2Y7E3	0.0	A0A1S2Y7E3_CICAR; protein LATERAL ORGAN BOUNDARIES-like
STRING	XP_004500020.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF24122	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	6e-55	ASYMMETRIC LEAVES 2-like 1

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]