PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004500263.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 456aa    MW: 52070.1 Da    PI: 9.1276
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004500263.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.11.7e-17167213148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g W+ eEd +l+++vkq+G + W+ Ia+++  gR +kqc++rw+++l
   XP_004500263.1 167 KGQWSDEEDRKLLKLVKQHGVRKWSQIAEKLE-GRAGKQCRERWHNHL 213
                      799*****************************.*************97 PP
2Myb_DNA-binding48.61.9e-15219261145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++W++eE+ +lv+ + + G++ W+ Ia++++ gRt++ +k++w+
   XP_004500263.1 219 KDSWSEEEERILVESHGKIGNR-WAEIAKKIP-GRTENAIKNHWN 261
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.816162217IPR017930Myb domain
SuperFamilySSF466896.83E-30164260IPR009057Homeodomain-like
SMARTSM007171.1E-16166215IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.5E-28168221IPR009057Homeodomain-like
CDDcd001676.30E-15170213No hitNo description
PfamPF139218.2E-20170227No hitNo description
PROSITE profilePS5129419.123218268IPR017930Myb domain
SMARTSM007173.1E-15218266IPR001005SANT/Myb domain
CDDcd001675.81E-11221264No hitNo description
Gene3DG3DSA:1.10.10.601.5E-19222266IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051302Biological Processregulation of cell division
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MTQEANFADH LMANEDVMNW SNQIPSLCVE KEDIINGLRK GGKGVGRRPK KITHHSSIGP  60
PLTAIDRFLW SQHNHFPQKK HQQNVDDGNF CSSGCSNAST YCFMWPNNVM TQEANFVDHL  120
MANEDMMNWT NQIPSLCVEK EDVNGLGKGG KGVGRRNKKV FTLSLIKGQW SDEEDRKLLK  180
LVKQHGVRKW SQIAEKLEGR AGKQCRERWH NHLRPDIKKD SWSEEEERIL VESHGKIGNR  240
WAEIAKKIPG RTENAIKNHW NATKRRQNSR RKNKRPQTTN GKPQSSILQD YIKTLSTQTN  300
NTTKSNFITP TNTTPSSSTS AISDEPSQNY QSNLVFENSS SPLIAESYDD ELLFMQQLFK  360
TNNSNQILTD HVNENGFVHS NYPNKTNSHN NSNNNNMYLS TSTSSNPMMM NYLNSDHYLS  420
PMMNNVELQL GSKNCSSNGK REMDLLDLVS STHFFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-4415626747158MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-4415626747158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1263274KRRQNSRRKNKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004500263.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0337662e-51CT033766.2 Medicago truncatula chromosome 5 clone mth4-42c9, COMPLETE SEQUENCE.
GenBankCT5735102e-51CT573510.2 Medicago truncatula chromosome 5 clone mth4-41f7, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004500263.10.0transcription factor MYB64-like
TrEMBLA0A1S2Y7W00.0A0A1S2Y7W0_CICAR; transcription factor MYB64-like
STRINGXP_004500263.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41293158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.12e-63myb domain protein 119