PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004500362.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB_related
Protein Properties Length: 504aa    MW: 56975.5 Da    PI: 6.35
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004500362.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.78.3e-11453503148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      + rWT  E+e l  +vk++G g+W+tI        + R++ ++k++w++ l
   XP_004500362.1 453 KRRWTSLEEETLRAGVKMFGEGNWRTIRDFYSnifEYRSGVDLKDKWRNML 503
                      579*********************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-13447504IPR009057Homeodomain-like
PROSITE profilePS5129417.145448504IPR017930Myb domain
SuperFamilySSF466894.56E-15449504IPR009057Homeodomain-like
SMARTSM007172.0E-6452504IPR001005SANT/Myb domain
PfamPF002498.0E-8453503IPR001005SANT/Myb domain
CDDcd116606.17E-18454504No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MDKDISNWVM EFLLRSSVPD SLIQKTLTVL PVSAADSRLK KTLLLRILQT QHLKASLSEM  60
SLHILEQLEE LHCNDAVPVP DAMRSAYCAV AVDSTVKYLI SSPEDPSGEY FSAVRRIWRG  120
RVVKLSALER RSGIFSDELI QWAEDIEAAL WDVRVSERLV GLNTRRDAMN EVKRYLKEAW  180
GLMGPSFLDS MASFSKAKDS RPEGVCEIAS GGEMLRKRDD LGKEKMYYVG DGDDKNDNDN  240
VVDDSDDDVA EVSENLGDEQ LEERVGTSVD PNQEVGGCDS LKGDKEIRKG NLQPKRKYSS  300
LRTCHRGVKI SGAEEVRPTN LLCKYDSLPS AEVKKVRESL KSSSMELKAL VKDPLPDALH  360
TSELVRSKLA TKDINLGPPI ENQSQRVDVP DSNACKIVVL YQPKDAKLEK KSVAHCSNSH  420
RPNLMEQASS ARASEWNDSI ENLPHESQPR RKKRRWTSLE EETLRAGVKM FGEGNWRTIR  480
DFYSNIFEYR SGVDLKDKWR NMLR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004500362.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004500362.10.0uncharacterized protein LOC101503526 isoform X1
TrEMBLA0A1S2Y6Z90.0A0A1S2Y6Z9_CICAR; uncharacterized protein LOC101503526 isoform X1
STRINGXP_004500362.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28243260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.18e-18TRF-like 5