PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004500442.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

LBD

Protein Properties

Length: 177aa MW: 19877.6 Da PI: 5.6634

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004500442.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	141.5	2.6e-44	6	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +Ca+Ck+lrr+Ca++C++apyfp+e+p+kfa+vhk+FGasnv+k+l++lp ++r++a++slvyeA+ar+rdPvyG+vg i+ lq+q+ ql+ +la XP_004500442.1 6 PCASCKLLRRRCAQECIFAPYFPSEDPRKFAIVHKVFGASNVSKMLQELPIHQRSEAVNSLVYEANARVRDPVYGCVGAISYLQNQVTQLQMQLA 100 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_004500442.1 101 VAQAE 105 *9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.106	5	106	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.3E-43	6	103	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MGGSSPCASC KLLRRRCAQE CIFAPYFPSE DPRKFAIVHK VFGASNVSKM LQELPIHQRS 60 EAVNSLVYEA NARVRDPVYG CVGAISYLQN QVTQLQMQLA VAQAEILCIQ MQQDPVSVTS 120 SLPTYVDQDD KLMLLSENSN CYEPHLLPQY PNFPSSSSSS SNVFQDYEPL KRESFWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-48	2	118	7	126	LOB family transfactor Ramosa2.1
5ly0_B	2e-48	2	118	7	126	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004500442.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU651581	1e-108	CU651581.9 M.truncatula DNA sequence from clone MTH2-66L10 on chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004500442.1	1e-130	LOB domain-containing protein 12
Swissprot	Q8LBW3	1e-75	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A1S2Y741	1e-128	A0A1S2Y741_CICAR; LOB domain-containing protein 12
STRING	XP_004500442.1	1e-129	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1664	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	2e-76	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]