PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004500453.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

M-type_MADS

Protein Properties

Length: 162aa MW: 18955.1 Da PI: 9.1516

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004500453.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	46.1	6.4e-15	12	49	5	42
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 n+s r++t+ kR++ ++KK +EL +LC+++++ i++s XP_004500453.1 12 NDSARKITYNKRKKSLMKKIKELTTLCGIDACAIVYSD 49 899*********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	14.745	1	49	IPR002100	Transcription factor, MADS-box
SMART	SM00432	4.3E-17	1	59	IPR002100	Transcription factor, MADS-box
CDD	cd00266	2.15E-24	1	84	No hit	No description
PRINTS	PR00404	8.4E-8	2	22	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	7.06E-23	2	94	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.1E-15	12	49	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.4E-8	22	37	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.4E-8	37	58	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MRNKVKLAFM INDSARKITY NKRKKSLMKK IKELTTLCGI DACAIVYSDF NSQPEVWPSP 60 WEIERIITKF KAYSEYEQGK KMLDQESFLM QRIVKSKEQL TKVEKNNSEM EQSLILFQCL 120 IRENFIYTLN TVVLNDLACV INEKLKGISL REDELDKNAS TI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004500453.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004500453.1	1e-116	agamous-like MADS-box protein AGL80
TrEMBL	A0A1S2Y772	1e-114	A0A1S2Y772_CICAR; agamous-like MADS-box protein AGL80
STRING	XP_004500453.1	1e-115	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF16302	3	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	3e-45	AGAMOUS-like 80