PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004500455.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family M-type_MADS
Protein Properties Length: 177aa    MW: 20494.5 Da    PI: 9.3857
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004500455.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.91.1e-171152344
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                    i +++nr  tf kR++g+lKK  EL++LC++e++ ii+++++
  XP_004500455.1 11 IISNINRRATFRKRKHGLLKKVRELCTLCGIEACAIIYGEND 52
                    66889**********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.9E-21160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.68151IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.5E-24394IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-9323IPR002100Transcription factor, MADS-box
CDDcd002669.25E-27385No hitNo description
PfamPF003195.2E-151152IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MDRRKVKLAY IISNINRRAT FRKRKHGLLK KVRELCTLCG IEACAIIYGE NDTRADVWPS  60
TTRARSILSR FMSLSKAERR KKMVDLEGFL TQSIAKAEET LKKQRNGNKK EEMGIIISQY  120
IRTGEYNLGH VNENYLNDLS EFIGDNIKKI DMKMKSMEDQ AQEEAGNEVE PMNDQDE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RRKVKLAYIISNINRRATFRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004500455.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004500455.11e-129agamous-like MADS-box protein AGL80
TrEMBLA0A1S2Y8S61e-128A0A1S2Y8S6_CICAR; agamous-like MADS-box protein AGL80
STRINGXP_004500455.11e-128(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1816226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-37AGAMOUS-like 80