PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004500456.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family M-type_MADS
Protein Properties Length: 198aa    MW: 22527.8 Da    PI: 5.4777
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004500456.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.11.8e-161152344
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                    i n+  r  tf kR+ngi+KK +EL +LC++e++ ii++++ 
  XP_004500456.1 11 IVNHGSRRATFRKRKNGIFKKISELTTLCGIEACAIIYGENE 52
                    66888899*******************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-21160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.61151IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.22E-23394IPR002100Transcription factor, MADS-box
CDDcd002669.19E-30385No hitNo description
PRINTSPR004043.3E-9323IPR002100Transcription factor, MADS-box
PfamPF003192.7E-151152IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MVRKKVKLAY IVNHGSRRAT FRKRKNGIFK KISELTTLCG IEACAIIYGE NEQEAEVWPS  60
PAGTRSVLNR FMSLPELERR RKMVDLERFL TKSIEKAQEL LKKQWEENKK KEMSIVIDQF  120
IYTGEYNIGN MVSLKDLNDF SAFIDLNLSE IDQKLNSMEP EIQGEGGNGA EPMIGIEQQA  180
NAGADVGPSM SYNMQIDD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAYIVNHGSRRATFRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004500456.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004500456.11e-145agamous-like MADS-box protein AGL80
TrEMBLA0A1S2Y7521e-144A0A1S2Y752_CICAR; agamous-like MADS-box protein AGL80
STRINGXP_004500456.11e-145(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1816226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.13e-37AGAMOUS-like 80