PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004500506.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

LBD

Protein Properties

Length: 199aa MW: 22231.4 Da PI: 8.1593

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004500506.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126.6	1.2e-39	24	123	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+l+r+C+++C++apyf +++ kkfa vhk+FGasnv+k+l ++pe++red+++sl+yeAear+rdPvyG++g i lq+++++l+++la XP_004500506.1 24 SCAACKLLKRRCTPNCIFAPYFHSNECKKFAKVHKVFGASNVSKILIEVPEKQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMMELQHDLA 118 6*********************************************************************************************9 PP DUF260 96 llkee 100 +k++ XP_004500506.1 119 IAKDR 123 99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.303	23	124	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.3E-39	24	121	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MIEQHNRKSE MKGMKGYEPR SSSSCAACKL LKRRCTPNCI FAPYFHSNEC KKFAKVHKVF 60 GASNVSKILI EVPEKQREDT VNSLAYEAEA RLRDPVYGCI GAIALLQRKM MELQHDLAIA 120 KDRLARCHAA AVASAAAATT TFSVDTLHSH VTLPPFPDFS PSNDIFCHNN SSSQFYTRDE 180 TVDDFNQIPC LFSSFGSLF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-44	19	126	6	113	LOB family transfactor Ramosa2.1
5ly0_B	5e-44	19	126	6	113	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004500506.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CR378661	1e-126	CR378661.1 M.truncatula DNA sequence from clone XX-10B15, complete sequence.
GenBank	CR937029	1e-126	CR937029.1 M.truncatula DNA sequence from clone MTH2-105B15 on chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004500506.1	1e-148	LOB domain-containing protein 21-like
Swissprot	Q9SRL8	9e-64	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	A0A1S2Y8W7	1e-147	A0A1S2Y8W7_CICAR; LOB domain-containing protein 21-like
STRING	XP_004500506.1	1e-148	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5944	33	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	2e-64	LOB domain-containing protein 21

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049]