PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004500737.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB_related
Protein Properties Length: 334aa    MW: 38553.2 Da    PI: 9.6537
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004500737.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.46.8e-13282328247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqky 47 
                      +rW++ E+e l  av++lG g+W++I +t    +Rt+ ++k++w++ 
   XP_004500737.1 282 KRWSELEEETLRTAVRKLGEGNWTAILNTYTfDNRTGVDLKDKWRNM 328
                      69*******************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.669273333IPR017930Myb domain
SuperFamilySSF466891.58E-13278329IPR009057Homeodomain-like
SMARTSM007171.6E-9280331IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-13282328IPR009057Homeodomain-like
PfamPF002491.5E-10282328IPR001005SANT/Myb domain
CDDcd116601.34E-17282330No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MEDDVRWCLE FLGGKSSVDI SEVNKRFLRM SVSDNCSRLK KTILLQTLQD ELYSKASTSE  60
WMLEALEVME TLLLSEDSCS NQITATMKDA YCAIAVECTI KYLEVETCNP AYRQAVERIW  120
KGRVQKMEPS SEREGSFLFS PELKRWKTII VVSLLNPTYV DMFASITHPR RDALKKLKLY  180
LDEALQNLAL SRNHQTEIQK DNETSLKGKV TTTGIDDANL TKTVTVYDVC DSSFREPNRA  240
ARTHKGGTSN KTRITLISPK KVKISPLKKY EPKKIFRRRK PKRWSELEEE TLRTAVRKLG  300
EGNWTAILNT YTFDNRTGVD LKDKWRNMER SGRQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00052PBMTransfer from AT1G15720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004500737.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004500737.10.0uncharacterized protein LOC101498622
TrEMBLA0A1S2Y7S50.0A0A1S2Y7S5_CICAR; uncharacterized protein LOC101498622
STRINGXP_004500737.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28243260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.12e-15TRF-like 5