PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004500738.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB_related
Protein Properties Length: 246aa    MW: 28595.8 Da    PI: 10.5639
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004500738.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.14.2e-13194240247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqky 47 
                      +rW++ E+e l  av++lG g+W++I +t    +Rt+ ++k++w++ 
   XP_004500738.1 194 KRWSELEEETLRTAVRKLGEGNWTAILNTYTfDNRTGVDLKDKWRNM 240
                      69*******************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.669185245IPR017930Myb domain
SuperFamilySSF466891.0E-13190241IPR009057Homeodomain-like
SMARTSM007171.6E-9192243IPR001005SANT/Myb domain
CDDcd116601.72E-17194242No hitNo description
PfamPF002499.1E-11194240IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.3E-14194240IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MDARSSRVEC TIKYLEVETC NPAYRQAVER IWKGRVQKME PSSEREGSFL FSPELKRWKT  60
IIVVSLLNPT YVDMFASITH PRRDALKKLK LYLDEALQNL ALSRNHQTEI QKDNETSLKG  120
KVTTTGIDDA NLTKTVTVYD VCDSSFREPN RAARTHKGGT SNKTRITLIS PKKVKISPLK  180
KYEPKKIFRR RKPKRWSELE EETLRTAVRK LGEGNWTAIL NTYTFDNRTG VDLKDKWRNM  240
ERSGRQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00052PBMTransfer from AT1G15720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004500738.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004500737.11e-177uncharacterized protein LOC101498622
TrEMBLA0A1S2Y7S51e-176A0A1S2Y7S5_CICAR; uncharacterized protein LOC101498622
STRINGXP_004500737.11e-177(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.11e-09TRF-like 5