PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004500740.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB_related
Protein Properties Length: 480aa    MW: 54451.8 Da    PI: 8.1366
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004500740.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.11.8e-12428474247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqky 47 
                      +rW++ E e l  av+++G g+Wk I +     +Rt+ ++k++w+++
   XP_004500740.1 428 KRWSKSEVETLRAAVTKHGIGNWKVILNLYTfGTRTEVDLKDKWRNL 474
                      69**************************99999************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.711422480IPR017930Myb domain
SuperFamilySSF466898.22E-14424475IPR009057Homeodomain-like
SMARTSM007172.7E-9426477IPR001005SANT/Myb domain
PfamPF002492.5E-9428474IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-13428475IPR009057Homeodomain-like
CDDcd116606.78E-18430476No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MEGDARDLCL SLEYLLRDSS VDTNFLNQLI STMSPSLIDF RMMKNFILRN LQDDFLSNAS  60
NPEHLLEILE VLEEILRRES ESETSSNPIT PAMKSVYCGV AVDCTLRFIE ADKYNPAYRK  120
TVERIWRDRV RYMETSSSSA GGSLLFSPDL ERWKAEIETS LLDPLVVEKL ATMPNTRRDA  180
FKKIKLCLTE AWGNLGPTLL QTTFQLHNKE LQQHKGSSVE VQKNNEKLKG KRIMTAVEEI  240
DLSASCSKAS YVLINEGPNT TAAEEIDPPP ACSKVNYVLI NEVRNTTAAQ EIDPPPTCSN  300
VNYVLIDPSA TCSKVNYALI NMVPPDFAIE DMNQEPQTEN QRSEANVANP QACHGINMSE  360
ANLTRTTTVH QNDVYNSSML EPNRATRTHE GGTSNKRSRN NLPNRERRNP PSVKNFDPTK  420
IRKRRKPKRW SKSEVETLRA AVTKHGIGNW KVILNLYTFG TRTEVDLKDK WRNLSKIVRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004500740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004500740.10.0uncharacterized protein LOC101499493 isoform X1
TrEMBLA0A1S2Y7N90.0A0A1S2Y7N9_CICAR; uncharacterized protein LOC101499493 isoform X1
STRINGXP_004500740.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28243260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17460.15e-09TRF-like 3