PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004500809.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB_related
Protein Properties Length: 81aa    MW: 9355.7 Da    PI: 9.5098
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004500809.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.23.9e-081558344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      WT+   +l+ +a +++ ++   +W  +a+ +g  ++ +++k ++
   XP_004500809.1 15 TWTPKQNKLFEKALAKYDKDtpdRWINVAKAVG-EKSVEEVKRHY 58
                     7********************************.9*********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.9191166IPR017884SANT domain
SMARTSM007176.7E-61264IPR001005SANT/Myb domain
SuperFamilySSF466898.97E-131470IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.1E-51568IPR009057Homeodomain-like
CDDcd001672.03E-51562No hitNo description
PfamPF002491.8E-61558IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 81 aa     Download sequence    Send to blast
MASNSLSKHK LCDSTWTPKQ NKLFEKALAK YDKDTPDRWI NVAKAVGEKS VEEVKRHYEI  60
LLEDLKHIES GRVPIPNYKS T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-3016811176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004500809.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4682643e-80CU468264.8 M.truncatula DNA sequence from clone MTH2-46F7 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027190333.12e-54protein RADIALIS-like 6
SwissprotQ1A1733e-34RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A3Q7XRQ75e-53A0A3Q7XRQ7_CICAR; protein RADIALIS-like 6
STRINGXP_004500809.19e-54(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.21e-36RAD-like 6