PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004500832.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family NAC
Protein Properties Length: 343aa    MW: 39219.3 Da    PI: 6.376
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004500832.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.92.8e-51241551128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                     lppGfrFhPtdeel+++yL+ kv + ++  + v ++evd++++ePw+Lp+ +k +e+ewy Fs rd+ky+tg r+nrat +gyWkatgkdkev++
  XP_004500832.1  24 LPPGFRFHPTDEELITFYLASKVFNPTNFSSIVkFAEVDLNRCEPWELPEVAKMGEREWYLFSLRDRKYPTGLRTNRATGAGYWKATGKDKEVYA 118
                     79*********************99995554666***************8888999*************************************** PP

             NAM  95 k...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +   +g+l g+kktLvfykgrap+gekt+Wvmheyrl
  XP_004500832.1 119 AaacTGSLLGMKKTLVFYKGRAPRGEKTKWVMHEYRL 155
                     98888899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-6019177IPR003441NAC domain
PROSITE profilePS5100557.4624177IPR003441NAC domain
PfamPF023652.1E-2625155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MMLAMEEVLC ELSDHENKRE QQGLPPGFRF HPTDEELITF YLASKVFNPT NFSSIVKFAE  60
VDLNRCEPWE LPEVAKMGER EWYLFSLRDR KYPTGLRTNR ATGAGYWKAT GKDKEVYAAA  120
ACTGSLLGMK KTLVFYKGRA PRGEKTKWVM HEYRLGPHYS HIHTCKEEWV ICRIFHKSVE  180
KRNSIIQVEG GSSNISLKKG SLLPPPPLLP NPTSFSLQND QLTHSHFPLH AFQTSFPITH  240
DMSQQNFTLQ KEPNIPKTEA TFYELYQSQS IDDVVNLRWI DHINNFQSSF PLEMNDDDEL  300
IAFSSGADSN AEFRDMSTST PFNSRLALDA SVGIDSWSQP QLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-492117714165NO APICAL MERISTEM PROTEIN
1ut4_B3e-492117714165NO APICAL MERISTEM PROTEIN
1ut7_A3e-492117714165NO APICAL MERISTEM PROTEIN
1ut7_B3e-492117714165NO APICAL MERISTEM PROTEIN
3swm_A2e-492117717168NAC domain-containing protein 19
3swm_B2e-492117717168NAC domain-containing protein 19
3swm_C2e-492117717168NAC domain-containing protein 19
3swm_D2e-492117717168NAC domain-containing protein 19
3swp_A2e-492117717168NAC domain-containing protein 19
3swp_B2e-492117717168NAC domain-containing protein 19
3swp_C2e-492117717168NAC domain-containing protein 19
3swp_D2e-492117717168NAC domain-containing protein 19
4dul_A3e-492117714165NAC domain-containing protein 19
4dul_B3e-492117714165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00241DAPTransfer from AT1G76420Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004500832.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004500832.10.0protein CUP-SHAPED COTYLEDON 3
SwissprotQ9S8511e-92NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A1S2Y7V80.0A0A1S2Y7V8_CICAR; protein CUP-SHAPED COTYLEDON 3
STRINGXP_004500832.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78883347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.13e-95NAC family protein
Publications ? help Back to Top
  1. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  2. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  3. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  4. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  5. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]