PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004500856.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

WOX

Protein Properties

Length: 216aa MW: 24815.8 Da PI: 5.322

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004500856.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	68.3	9.7e-22	82	142	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +p++++++++A +l +++e++V++WFqNrRa+ k+ XP_004500856.1 82 RQRWTPTPLQLQILERIFDEgNGTPTKQKIKDIAIELgqhgQISETNVYNWFQNRRARSKR 142 89***************99************************************97 PP
2	Wus_type_Homeobox	98.5	5.1e-32	81	144	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtPtp Q++iLe+++++G tP+k++i++i+ eL ++G+i+++NV++WFQNr+aR++++q XP_004500856.1 81 SRQRWTPTPLQLQILERIFDEGNGTPTKQKIKDIAIELGQHGQISETNVYNWFQNRRARSKRRQ 144 689***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.1E-17	78	145	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.321	78	143	IPR001356	Homeobox domain
SMART	SM00389	3.4E-16	80	147	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.41E-19	81	144	IPR009057	Homeodomain-like
CDD	cd00086	2.41E-15	82	144	No hit	No description
Pfam	PF00046	2.1E-19	82	142	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MEAEHEYDSC SNSNGGFLYV KVMTDEQMEV LRQQIAVYTS ISDHLVQMHK SITSQHDLSG 60 LRLGNLYCDP LMACSGHKIS SRQRWTPTPL QLQILERIFD EGNGTPTKQK IKDIAIELGQ 120 HGQISETNVY NWFQNRRARS KRRQLVSTIN QTEPEAEIEV ESPKETQTLE ETDQVQFFQN 180 LSPHRVKDMY IQSPDIGFDQ LLGKIEIAGS YSSYFL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004500856.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004500856.1	1e-162	WUSCHEL-related homeobox 8-like isoform X1
Swissprot	Q5QMM3	2e-69	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A1S2Y7X9	1e-161	A0A1S2Y7X9_CICAR; WUSCHEL-related homeobox 8-like isoform X1
STRING	XP_004500856.1	1e-162	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1855	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	2e-68	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]