PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004500929.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB_related
Protein Properties Length: 671aa    MW: 76638.6 Da    PI: 8.9115
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004500929.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.47.6e-09614658345
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                      +W++  +  lv+a k ++++   +W+++++ ++ g+t +qck ++ 
   XP_004500929.1 614 AWSAVQERALVQALKTFPKEanqRWERVSAAVP-GKTVNQCKKKFA 658
                      8********************************.********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1106.0E-2193196IPR001623DnaJ domain
SuperFamilySSF465651.44E-1995202IPR001623DnaJ domain
SMARTSM002715.2E-1596171IPR001623DnaJ domain
CDDcd062575.95E-1297168IPR001623DnaJ domain
PfamPF002262.7E-1797176IPR001623DnaJ domain
PROSITE profilePS5007618.59297179IPR001623DnaJ domain
PRINTSPR006254.5E-8102120IPR001623DnaJ domain
PRINTSPR006254.5E-8120135IPR001623DnaJ domain
PRINTSPR006254.5E-8151171IPR001623DnaJ domain
PROSITE patternPS006360156175IPR018253DnaJ domain, conserved site
PROSITE profilePS500906.098456511IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.609.0E-4457503IPR009057Homeodomain-like
SMARTSM007172.6E-5460513IPR001005SANT/Myb domain
SuperFamilySSF466895.31E-7462505IPR009057Homeodomain-like
CDDcd001674.34E-4463505No hitNo description
PROSITE profilePS512939.995610665IPR017884SANT domain
SMARTSM007178.9E-9611663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-5612658IPR009057Homeodomain-like
SuperFamilySSF466891.94E-8613667IPR009057Homeodomain-like
CDDcd001674.48E-6614661No hitNo description
PfamPF002491.7E-7614660IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MAVHMKYRLI TYSEEIVDGQ PIFVSSNCLP TKALKYEPAG HSFHSAALKL LGVKEEKDKE  60
ADIKKVVEEK EQTYLPSDSY SSKGKKKSGD GDKQQQDHYA LLGLSHLRYL ATEDQIRKSY  120
RETALRFHPD KQASLVLLEV TEAAKQAKKE EIETHFKAIQ EAYEVLVDPL KRRIYDSTDE  180
FDDEIPTDCA PQDFFKVFGP AFLRNGRWSV TQPIPFLGDD KTPIKEVDSF YNFWYSFKSW  240
REFPHADEFD LEQADSRDHR RWMERQNAKL SEKARKEEYA RVRTLVDNAY KRDPRILRRK  300
EEEKAEKKRK KEAKYMAKRL QEEEEARIAE EEKRRKAEED KLAAEAALQQ KKVKEKEKKL  360
LRKERTRLRN LSGTISSQRV LDISVDDVEK LCMSFDLLQL RGLCEKMEGK EVLEQAKAIR  420
DALSCEKDDA DEKSNQSIQQ NGSVKANGNS SSLEAYKEKK EKPWTKEEIE LLRKGMVKFP  480
KGTSRRWEVV SEYIGTERSV EEIMKATKTV LLQKPDTSKA FDTFLEKRKP AVSIASPLST  540
REELEGVSIS ATTPENSTAA TSTTTPENST AAASTTTTTP PPPTATPIPT PAVTTTTINS  600
TSSEESQGVS EQDAWSAVQE RALVQALKTF PKEANQRWER VSAAVPGKTV NQCKKKFAMM  660
KENFRNKKTA V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A6e-1819329620123Zuotin
5dje_B6e-1819329620123Zuotin
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1306310KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004500929.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004500929.10.0dnaJ homolog subfamily C member 2-like
TrEMBLA0A1S2Y9T60.0A0A1S2Y9T6_CICAR; dnaJ homolog subfamily C member 2-like
STRINGXP_004500929.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60833348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain