PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004500979.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family TALE
Protein Properties Length: 457aa    MW: 52148.2 Da    PI: 6.1655
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004500979.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.18.1e-103804171954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yp+ +e+  LA+++gLt++qV++WF N R +
  XP_004500979.1 380 FEHflHPYPNDSEKLMLASQTGLTKNQVSNWFINARVR 417
                     664459******************************88 PP
2BELL1116.9e-36243313272
            BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     ++e+q+k+akL+ ll+eV+ rY++y++q++ v+ssFe++aglg+ak Yt+lAl+a+SrhF +L+dai++qi
  XP_004500979.1 243 KHEHQIKIAKLIALLDEVESRYEKYYHQMEEVVSSFEMIAGLGAAKCYTALALQAMSRHFCSLRDAIMSQI 313
                     79********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.4E-33173311IPR006563POX domain
PfamPF075262.2E-41179310IPR006563POX domain
CDDcd000864.38E-11361422No hitNo description
SMARTSM003895.4E-10361425IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.7E-28366427IPR009057Homeodomain-like
SuperFamilySSF466899.84E-18367429IPR009057Homeodomain-like
PfamPF059205.1E-17378417IPR008422Homeobox KN domain
PROSITE profilePS5007111.888380421IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MSNSMTHQNQ FENHQELISC YGSSSLRNNN NAAYPHETLT YPNIESIGDR IISRTVNLVQ  60
GSESEMSHTR HLMDLLGAAN ENNHQQQGLS LSLNSHMFVD EYNRHRSLNQ ALINPSYFMS  120
QPQETTRDET CNHQPVENLT SDYFFSGGNF PSSSNNNNSI LNNRSPSTSY GPESFAAIIG  180
NSRYLKPVQS LLEDLVDVGG NVIDRMNEKY AEKLFHGSRT GARTLSSELK AELRNNGHLL  240
ADKHEHQIKI AKLIALLDEV ESRYEKYYHQ MEEVVSSFEM IAGLGAAKCY TALALQAMSR  300
HFCSLRDAIM SQINVEKRKL FQDLPKINNG LSQLSLFERD SRQNRMSLQQ LGVIQNQRQV  360
WRPIRGLPET SVAILRAWLF EHFLHPYPND SEKLMLASQT GLTKNQVSNW FINARVRLWK  420
PMIEEMYKEE FGDSSEDSNP PANNFMSRDD VTDCVED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-16367425563Homeobox protein Meis2
3k2a_B1e-16367425563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004500979.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004500979.10.0BEL1-like homeodomain protein 11
SwissprotQ1PFD11e-106BLH11_ARATH; BEL1-like homeodomain protein 11
TrEMBLA0A1S2Y8720.0A0A1S2Y872_CICAR; BEL1-like homeodomain protein 11
STRINGXP_004500979.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126452329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.11e-108BEL1-like homeodomain 11