PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004501008.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB_related
Protein Properties Length: 93aa    MW: 10862.5 Da    PI: 9.6019
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004501008.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.41e-10345444
                     S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     WT eE  ++ da + +G++   +W ++a+ +g g++ k++k ++
   XP_004501008.1  3 WTREENMRFEDALAVYGPEdpnRWQKVANAVG-GKSVKEVKMHY 45
                     *****************99*************.********999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.921153IPR017884SANT domain
SMARTSM007171.1E-5351IPR001005SANT/Myb domain
PfamPF002491.4E-8345IPR001005SANT/Myb domain
CDDcd001673.81E-8345No hitNo description
SuperFamilySSF466895.31E-13356IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.6E-6355IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MGWTREENMR FEDALAVYGP EDPNRWQKVA NAVGGKSVKE VKMHYEILME DVTRIERDQI  60
PLPIYRGGAA INFKGTQFVD HQISKRMRNL NIR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A9e-203931193RADIALIS
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004501008.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004501008.11e-64protein RADIALIS-like 4
TrEMBLA0A1S2Y9Z32e-63A0A1S2Y9Z3_CICAR; protein RADIALIS-like 4
STRINGXP_004501008.14e-64(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF153651012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.11e-24RAD-like 1