PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004501120.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

SRS

Protein Properties

Length: 201aa MW: 22149 Da PI: 8.243

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004501120.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	173.6	9.8e-54	15	144	18	153
DUF702 18 dCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkeletsslPeevsse 112 +C h RCRtCCksrgf+C+thvkstWvpaakrrerq++l+a+++ + + +++kr+r++ +++ + +l+ + + le+ ++P+evss+ XP_004501120.1 15 ECIHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQHHLSALQQFRG---DGDNPKRHRDN---HAAPSLIPSLPPPIPATGLEVGQFPAEVSSS 103 8***********************************999976654...57888888885...55666677888899999********** PP DUF702 113 avfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 vfrcvrv+s+d +e++aYqtav+igGhvfkGiLydqG+ XP_004501120.1 104 VVFRCVRVRSLDGPDEQCAYQTAVNIGGHVFKGILYDQGPP 144 *************************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01623	1.9E-18	15	46	IPR006510	Zinc finger, lateral root primordium type 1
Pfam	PF05142	7.3E-51	15	143	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01624	1.9E-23	95	143	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MDKDTCMSEL GMVSECIHLR CRTCCKSRGF QCQTHVKSTW VPAAKRRERQ HHLSALQQFR 60 GDGDNPKRHR DNHAAPSLIP SLPPPIPATG LEVGQFPAEV SSSVVFRCVR VRSLDGPDEQ 120 CAYQTAVNIG GHVFKGILYD QGPPSSTTAP IDHHGSSSEP RHQLHFLTAP IATTGNPFDP 180 SIYSAPLNAP FMPRSTQFFH P

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269\|PubMed:10368174, ECO:0000269\|PubMed:11706176, ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004501120.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027190350.1	1e-137	protein SHI RELATED SEQUENCE 1-like
Swissprot	Q9XGX0	2e-48	SHI_ARATH; Protein SHORT INTERNODES
TrEMBL	A0A3Q7YFE5	1e-136	A0A3Q7YFE5_CICAR; protein SHI RELATED SEQUENCE 1-like
STRING	XP_004501120.1	1e-148	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF882	34	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	3e-39	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Islam MA, et al. Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants. PLoS ONE, 2013. 8(1): p. e53377 [PMID:23308204] Pfannebecker KC,Lange M,Rupp O,Becker A An Evolutionary Framework for Carpel Developmental Control Genes. Mol. Biol. Evol., 2017. 34(2): p. 330-348 [PMID:28049761] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]