PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004501409.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ERF
Protein Properties Length: 216aa    MW: 24800.1 Da    PI: 5.825
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004501409.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.52.9e-172775355
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ykGVr +k +g+Wv+eIr p++   r r++lg++++ae+Aa+a +aa  +l+g
  XP_004501409.1 27 YKGVRKRK-WGKWVSEIRLPNS---RERIWLGSHDSAEKAARAFDAALYCLRG 75
                    9****999.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.8E-282689IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-202684IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.4E-282684IPR001471AP2/ERF domain
PROSITE profilePS5103221.3512683IPR001471AP2/ERF domain
PfamPF008475.0E-102775IPR001471AP2/ERF domain
CDDcd000181.56E-272785No hitNo description
PRINTSPR003679.5E-92738IPR001471AP2/ERF domain
PRINTSPR003679.5E-94965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MNVDMDHVSD STTHDKKKCE ENKKKMYKGV RKRKWGKWVS EIRLPNSRER IWLGSHDSAE  60
KAARAFDAAL YCLRGRHANF NFPDTPFNLV NNVNNYNNSL TPQQIQQIAS NFANNINQPP  120
TNVVDNNNHN NAASSSSNTS TIDWTFLNAL DASTEDANFI HNYGDLEKMH SGELLYSIPP  180
PFFEDDNNRN QIEANIDAGD YDDPFSHPSF LWNWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1527931581Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11533KKKCEENKKKMYKGVRKRK
22733KGVRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004501409.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004501409.11e-160ethylene-responsive transcription factor ERF017-like
SwissprotQ9S7L54e-39ERF18_ARATH; Ethylene-responsive transcription factor ERF018
TrEMBLA0A1S2Y9B61e-159A0A1S2Y9B6_CICAR; ethylene-responsive transcription factor ERF017-like
STRINGXP_004501409.11e-160(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14793399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.15e-32ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chen HY, et al.
    ORA47 (octadecanoid-responsive AP2/ERF-domain transcription factor 47) regulates jasmonic acid and abscisic acid biosynthesis and signaling through binding to a novel cis-element.
    New Phytol., 2016. 211(2): p. 599-613
    [PMID:26974851]
  4. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]