PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004501595.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

MYB

Protein Properties

Length: 237aa MW: 26102.8 Da PI: 7.9355

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004501595.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	61.8	1.4e-19	35	80	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l ++v+q+G+++W++I+r++ gR++k+c++rw + XP_004501595.1 35 KGPWSAEEDRILTRLVEQHGPRNWSLISRYIK-GRSGKSCRLRWCNQ 80 79***************************9.*********985 PP
2	Myb_DNA-binding	59.2	8.9e-19	89	131	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +++++Ede ++ a++q+G++ W+tIar ++ gRt++ +k++w++ XP_004501595.1 89 PFSPQEDETIIAAHAQYGNR-WATIARLLP-GRTDNAVKNHWNST 131 89****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	25.758	30	85	IPR017930	Myb domain
SuperFamily	SSF46689	5.03E-32	32	128	IPR009057	Homeodomain-like
SMART	SM00717	3.2E-17	34	83	IPR001005	SANT/Myb domain
Pfam	PF00249	3.1E-18	35	80	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-25	36	88	IPR009057	Homeodomain-like
CDD	cd00167	3.03E-16	37	79	No hit	No description
SMART	SM00717	3.0E-16	86	134	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	22.176	87	136	IPR017930	Myb domain
Pfam	PF00249	1.8E-15	89	131	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-23	89	135	IPR009057	Homeodomain-like
CDD	cd00167	3.14E-13	89	132	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MEAINRSSST TTSSSDSCSS ESNQINHQNK LDRIKGPWSA EEDRILTRLV EQHGPRNWSL 60 ISRYIKGRSG KSCRLRWCNQ LSPTVEHRPF SPQEDETIIA AHAQYGNRWA TIARLLPGRT 120 DNAVKNHWNS TLKRKASGLG GDCSVVVAGN VTASNEGGSF SSGRGVRSCL PVEDDPLTAL 180 TLAPPGNGVD YQEEVVADHR QSPENVPSGF WDVMRGVIAR EVREYVSSNF SHNSGFH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	3e-40	34	136	3	105	MYB PROTO-ONCOGENE PROTEIN
1mse_C	3e-40	34	136	3	105	C-Myb DNA-Binding Domain
1msf_C	3e-40	34	136	3	105	C-Myb DNA-Binding Domain
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004501595.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004501595.1	1e-176	transcription factor MYB1-like
TrEMBL	A0A1S2Y9P9	1e-175	A0A1S2Y9P9_CICAR; transcription factor MYB1-like
STRING	XP_004501595.1	1e-176	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5074	32	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50060.1	2e-61	myb domain protein 77