PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004501652.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB_related
Protein Properties Length: 613aa    MW: 66529.6 Da    PI: 9.1799
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004501652.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.11.5e-11202251148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 
                      r++W++eEd ll  av++lG g+W+t a+      +R++ q+  rw +++
   XP_004501652.1 202 RKAWSEEEDNLLRAAVQRLGEGNWATMAKGDDfpVKRSATQLAQRWSTLR 251
                      789*************************97666699**********9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.366197255IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.9E-13198256IPR009057Homeodomain-like
SuperFamilySSF466892.73E-11200253IPR009057Homeodomain-like
SMARTSM007178.0E-11201253IPR001005SANT/Myb domain
PfamPF002491.4E-9202250IPR001005SANT/Myb domain
CDDcd116604.07E-13203252No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    Send to blast
MPEKNSNKVP FSENDIATLV QRYDATILLT LLQEIAHYHD TKKFDWNELV KKTSTGISNP  60
REYQMLWRYL AYHDSLNQIF EEADQPVDDD SDLDCEPESL ASVSVESASE SSACVKVMIA  120
SRTLSESTPS SSTIEAPLTV YLPVCCSSRT PKENSQPSDL MGQASISFPV TVHRQTLPTV  180
SSTDALETKG LVGGTMASKR KRKAWSEEED NLLRAAVQRL GEGNWATMAK GDDFPVKRSA  240
TQLAQRWSTL RKKDCSTNTG TNVTNTQYTT AEQLATRHSL SLALDMPFKK LTAPGMTNPN  300
PGRTSTSIKN QVQSRNATEV STVRSSVPAQ RPSQQAVLGS CGSPAKSKLA SESSVSKCNT  360
IPGPSQQAVL GSCGSPAKFK LASENPVSKC NAISGRELKP AIVHSGAQTV SRPNTLTVSR  420
PNAPTVSRPN TLPQFKVAQA KNVVHPVPAG SSLTKTPISA GLPSVQKDKH VTSVQEEVKR  480
VSDLGSTPKE KVKEEETSAL TTQSQVDSKL DKAKLELDKA KSMPGEKILE NKVVVSQNPR  540
GCEEQGSVQN SNLIPKKAAT ENGNDKVNKE SQVQNQDKKT NSSNGSSNQQ NMHQKQVHLP  600
KQDERLQGLE QPK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004501652.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004501652.10.0uncharacterized protein LOC101514044
TrEMBLA0A1S2Y9V10.0A0A1S2Y9V1_CICAR; uncharacterized protein LOC101514044
STRINGXP_004501652.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31223256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.12e-56MYB_related family protein